Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0046 and Shew_0047 are separated by 10 nucleotides Shew_0047 and Shew_0048 are separated by 118 nucleotides Shew_0048 and Shew_0049 are separated by 380 nucleotides
Shew_0046: Shew_0046 - molybdenum cofactor synthesis domain-containing protein (RefSeq), at 56,169 to 57,416
_0046
Shew_0047: Shew_0047 - molybdopterin biosynthesis protein MoeB (RefSeq), at 57,427 to 58,194
_0047
Shew_0048: Shew_0048 - short chain dehydrogenase (RefSeq), at 58,313 to 59,020
_0048
Shew_0049: Shew_0049 - choline/carnitine/betaine transporter (RefSeq), at 59,401 to 60,972
_0049
Position (kb) 58
59
60 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 57.361 kb on - strand at 57.390 kb on - strand at 57.400 kb on - strand at 57.500 kb on + strand at 57.525 kb on - strand, within Shew_0047 at 57.565 kb on + strand, within Shew_0047 at 57.696 kb on + strand, within Shew_0047 at 57.704 kb on - strand, within Shew_0047 at 57.704 kb on - strand, within Shew_0047 at 57.752 kb on - strand, within Shew_0047 at 58.002 kb on - strand, within Shew_0047 at 58.399 kb on - strand, within Shew_0048 at 58.445 kb on - strand, within Shew_0048 at 58.649 kb on - strand, within Shew_0048 at 58.759 kb on + strand, within Shew_0048 at 58.834 kb on - strand, within Shew_0048 at 58.897 kb on + strand, within Shew_0048 at 58.902 kb on + strand, within Shew_0048 at 58.969 kb on + strand at 59.003 kb on - strand at 59.464 kb on + strand at 59.565 kb on + strand, within Shew_0049 at 59.781 kb on - strand, within Shew_0049 at 59.903 kb on - strand, within Shew_0049 at 59.918 kb on - strand, within Shew_0049 at 59.918 kb on - strand, within Shew_0049
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 57,361 - -5.1 57,390 - -1.0 57,400 - -0.1 57,500 + +0.1 57,525 - Shew_0047 0.13 -1.0 57,565 + Shew_0047 0.18 -1.2 57,696 + Shew_0047 0.35 +0.5 57,704 - Shew_0047 0.36 -2.0 57,704 - Shew_0047 0.36 +0.1 57,752 - Shew_0047 0.42 -1.1 58,002 - Shew_0047 0.75 -1.0 58,399 - Shew_0048 0.12 -0.5 58,445 - Shew_0048 0.19 -0.5 58,649 - Shew_0048 0.47 +0.3 58,759 + Shew_0048 0.63 -3.3 58,834 - Shew_0048 0.74 -0.9 58,897 + Shew_0048 0.82 +0.4 58,902 + Shew_0048 0.83 -1.4 58,969 + -0.0 59,003 - +1.8 59,464 + +0.5 59,565 + Shew_0049 0.10 -1.2 59,781 - Shew_0049 0.24 +0.2 59,903 - Shew_0049 0.32 -0.1 59,918 - Shew_0049 0.33 +1.3 59,918 - Shew_0049 0.33 -0.0
Or see this region's nucleotide sequence