Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0016 and Shew_0017 overlap by 17 nucleotides Shew_0017 and fadA are separated by 354 nucleotides fadA and fadB are separated by 21 nucleotides
Shew_0016: Shew_0016 - ybaK/ebsC protein (RefSeq), at 18,563 to 19,027
_0016
Shew_0017: Shew_0017 - GCN5-related N-acetyltransferase (RefSeq), at 19,011 to 19,499
_0017
Shew_0018: fadA - 3-ketoacyl-CoA thiolase (RefSeq), at 19,854 to 21,017
fadA
Shew_0019: fadB - multifunctional fatty acid oxidation complex subunit alpha (RefSeq), at 21,039 to 23,189
fadB
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.024 kb on + strand at 19.075 kb on + strand, within Shew_0017 at 19.170 kb on + strand, within Shew_0017 at 19.334 kb on + strand, within Shew_0017 at 19.339 kb on + strand, within Shew_0017 at 19.346 kb on + strand, within Shew_0017 at 19.347 kb on - strand, within Shew_0017 at 19.426 kb on + strand, within Shew_0017 at 19.771 kb on - strand at 19.871 kb on - strand at 19.900 kb on - strand at 19.960 kb on - strand at 19.961 kb on + strand at 19.965 kb on - strand at 20.088 kb on + strand, within fadA at 20.162 kb on + strand, within fadA at 20.297 kb on + strand, within fadA at 20.660 kb on - strand, within fadA at 20.836 kb on - strand, within fadA at 20.916 kb on - strand at 20.981 kb on - strand at 21.160 kb on - strand at 21.160 kb on - strand at 21.192 kb on - strand at 21.216 kb on - strand at 21.369 kb on + strand, within fadB at 21.417 kb on - strand, within fadB at 21.457 kb on + strand, within fadB at 21.544 kb on + strand, within fadB at 21.557 kb on - strand, within fadB at 21.784 kb on - strand, within fadB at 21.855 kb on - strand, within fadB at 21.870 kb on - strand, within fadB at 21.882 kb on - strand, within fadB
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 19,024 + +0.1 19,075 + Shew_0017 0.13 +1.0 19,170 + Shew_0017 0.33 -0.4 19,334 + Shew_0017 0.66 +0.2 19,339 + Shew_0017 0.67 +2.1 19,346 + Shew_0017 0.69 -0.1 19,347 - Shew_0017 0.69 -1.1 19,426 + Shew_0017 0.85 -2.3 19,771 - -0.2 19,871 - -2.1 19,900 - -1.3 19,960 - -0.1 19,961 + -1.3 19,965 - -0.4 20,088 + fadA Shew_0018 0.20 -3.0 20,162 + fadA Shew_0018 0.26 -1.3 20,297 + fadA Shew_0018 0.38 -0.1 20,660 - fadA Shew_0018 0.69 -1.1 20,836 - fadA Shew_0018 0.84 -0.7 20,916 - +2.4 20,981 - -0.6 21,160 - -1.1 21,160 - -0.2 21,192 - -2.4 21,216 - -1.1 21,369 + fadB Shew_0019 0.15 -0.6 21,417 - fadB Shew_0019 0.18 -0.4 21,457 + fadB Shew_0019 0.19 -1.7 21,544 + fadB Shew_0019 0.23 -0.5 21,557 - fadB Shew_0019 0.24 -1.8 21,784 - fadB Shew_0019 0.35 -0.1 21,855 - fadB Shew_0019 0.38 -0.8 21,870 - fadB Shew_0019 0.39 -0.3 21,882 - fadB Shew_0019 0.39 +0.3
Or see this region's nucleotide sequence