Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4200 and Dshi_4201 overlap by 4 nucleotides Dshi_4201 and Dshi_4202 overlap by 4 nucleotides Dshi_4202 and Dshi_4203 are separated by 47 nucleotides
Dshi_4200: Dshi_4200 - Carbon-monoxide dehydrogenase (acceptor) (RefSeq), at 46,743 to 47,576
_4200
Dshi_4201: Dshi_4201 - (2Fe-2S)-binding domain protein (RefSeq), at 47,573 to 48,073
_4201
Dshi_4202: Dshi_4202 - Carbon-monoxide dehydrogenase (acceptor) (RefSeq), at 48,070 to 50,451
_4202
Dshi_4203: Dshi_4203 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 50,499 to 51,551
_4203
Position (kb)
48
49
50
51 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 47.297 kb on + strand, within Dshi_4200 at 47.316 kb on - strand, within Dshi_4200 at 47.331 kb on + strand, within Dshi_4200 at 47.589 kb on - strand at 47.630 kb on + strand, within Dshi_4201 at 47.638 kb on + strand, within Dshi_4201 at 47.638 kb on - strand, within Dshi_4201 at 47.651 kb on + strand at 47.690 kb on - strand, within Dshi_4201 at 47.816 kb on + strand, within Dshi_4201 at 48.159 kb on - strand at 48.231 kb on - strand at 48.328 kb on + strand, within Dshi_4202 at 48.348 kb on - strand, within Dshi_4202 at 49.104 kb on - strand, within Dshi_4202 at 49.322 kb on + strand, within Dshi_4202 at 49.332 kb on + strand at 49.399 kb on + strand, within Dshi_4202 at 49.400 kb on - strand, within Dshi_4202 at 49.484 kb on - strand, within Dshi_4202 at 49.620 kb on + strand, within Dshi_4202 at 49.620 kb on + strand, within Dshi_4202 at 49.962 kb on - strand, within Dshi_4202 at 49.998 kb on + strand, within Dshi_4202 at 50.107 kb on - strand, within Dshi_4202 at 50.324 kb on - strand at 50.366 kb on + strand at 50.516 kb on + strand at 50.632 kb on - strand, within Dshi_4203 at 50.639 kb on + strand, within Dshi_4203 at 50.660 kb on + strand, within Dshi_4203 at 50.678 kb on - strand, within Dshi_4203 at 50.784 kb on + strand, within Dshi_4203 at 50.846 kb on + strand, within Dshi_4203 at 50.890 kb on - strand, within Dshi_4203 at 50.896 kb on - strand, within Dshi_4203 at 50.922 kb on - strand, within Dshi_4203 at 51.164 kb on + strand, within Dshi_4203 at 51.194 kb on + strand, within Dshi_4203 at 51.196 kb on - strand, within Dshi_4203 at 51.372 kb on - strand, within Dshi_4203 at 51.374 kb on + strand, within Dshi_4203 at 51.414 kb on + strand, within Dshi_4203
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 47,297 + Dshi_4200 0.66 +0.0 47,316 - Dshi_4200 0.69 +1.2 47,331 + Dshi_4200 0.71 -1.4 47,589 - -2.8 47,630 + Dshi_4201 0.11 +0.4 47,638 + Dshi_4201 0.13 +1.6 47,638 - Dshi_4201 0.13 -1.0 47,651 + +0.6 47,690 - Dshi_4201 0.23 +2.9 47,816 + Dshi_4201 0.49 -1.7 48,159 - +1.2 48,231 - +0.0 48,328 + Dshi_4202 0.11 +1.2 48,348 - Dshi_4202 0.12 +3.4 49,104 - Dshi_4202 0.43 +0.8 49,322 + Dshi_4202 0.53 -1.4 49,332 + -0.4 49,399 + Dshi_4202 0.56 -0.4 49,400 - Dshi_4202 0.56 +0.6 49,484 - Dshi_4202 0.59 +0.2 49,620 + Dshi_4202 0.65 +2.6 49,620 + Dshi_4202 0.65 +1.2 49,962 - Dshi_4202 0.79 +1.2 49,998 + Dshi_4202 0.81 -3.3 50,107 - Dshi_4202 0.86 -0.5 50,324 - -2.0 50,366 + +1.3 50,516 + +3.2 50,632 - Dshi_4203 0.13 +1.0 50,639 + Dshi_4203 0.13 +0.6 50,660 + Dshi_4203 0.15 -2.5 50,678 - Dshi_4203 0.17 -3.0 50,784 + Dshi_4203 0.27 -2.4 50,846 + Dshi_4203 0.33 +0.6 50,890 - Dshi_4203 0.37 +2.9 50,896 - Dshi_4203 0.38 -0.5 50,922 - Dshi_4203 0.40 +0.6 51,164 + Dshi_4203 0.63 -1.4 51,194 + Dshi_4203 0.66 +2.6 51,196 - Dshi_4203 0.66 +1.6 51,372 - Dshi_4203 0.83 +1.4 51,374 + Dshi_4203 0.83 +1.6 51,414 + Dshi_4203 0.87 +0.6
Or see this region's nucleotide sequence