Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4168 and Dshi_4169 are separated by 100 nucleotides Dshi_4169 and Dshi_4170 are separated by 83 nucleotides Dshi_4170 and Dshi_4171 overlap by 1 nucleotides
Dshi_4168: Dshi_4168 - CDP-alcohol phosphatidyltransferase (RefSeq), at 16,796 to 17,545
_4168
Dshi_4169: Dshi_4169 - cytochrome B561 (RefSeq), at 17,646 to 18,203
_4169
Dshi_4170: Dshi_4170 - periplasmic glucan biosynthesis protein (RefSeq), at 18,287 to 19,852
_4170
Dshi_4171: Dshi_4171 - periplasmic glucan biosynthesis protein MdoG (RefSeq), at 19,852 to 21,336
_4171
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.553 kb on + strand at 17.581 kb on - strand at 17.777 kb on - strand, within Dshi_4169 at 17.930 kb on + strand, within Dshi_4169 at 18.172 kb on + strand at 18.309 kb on + strand at 18.376 kb on - strand at 18.641 kb on + strand, within Dshi_4170 at 18.659 kb on - strand, within Dshi_4170 at 18.885 kb on - strand, within Dshi_4170 at 19.001 kb on + strand, within Dshi_4170 at 19.001 kb on + strand, within Dshi_4170 at 19.379 kb on + strand, within Dshi_4170 at 19.439 kb on - strand, within Dshi_4170 at 19.494 kb on + strand, within Dshi_4170 at 20.185 kb on - strand, within Dshi_4171 at 20.787 kb on + strand, within Dshi_4171
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 17,553 + -2.7 17,581 - +0.3 17,777 - Dshi_4169 0.23 -2.8 17,930 + Dshi_4169 0.51 +0.6 18,172 + -2.7 18,309 + +0.6 18,376 - -2.6 18,641 + Dshi_4170 0.23 -2.2 18,659 - Dshi_4170 0.24 +1.6 18,885 - Dshi_4170 0.38 +0.6 19,001 + Dshi_4170 0.46 +0.6 19,001 + Dshi_4170 0.46 +0.8 19,379 + Dshi_4170 0.70 -1.0 19,439 - Dshi_4170 0.74 +1.4 19,494 + Dshi_4170 0.77 +1.0 20,185 - Dshi_4171 0.22 +0.6 20,787 + Dshi_4171 0.63 -1.7
Or see this region's nucleotide sequence