Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4116

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4115 and Dshi_4116 are separated by 3 nucleotidesDshi_4116 and Dshi_4117 overlap by 4 nucleotidesDshi_4117 and Dshi_4118 are separated by 34 nucleotides Dshi_4115: Dshi_4115 - dTDP-glucose 4,6-dehydratase (RefSeq), at 46,978 to 48,018 _4115 Dshi_4116: Dshi_4116 - hypothetical protein (RefSeq), at 48,022 to 48,855 _4116 Dshi_4117: Dshi_4117 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 48,852 to 49,709 _4117 Dshi_4118: Dshi_4118 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 49,744 to 50,616 _4118 Position (kb) 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 47.071 kb on + strandat 47.312 kb on + strand, within Dshi_4115at 47.312 kb on + strand, within Dshi_4115at 47.312 kb on + strand, within Dshi_4115at 47.320 kb on - strand, within Dshi_4115at 47.406 kb on - strand, within Dshi_4115at 47.548 kb on - strand, within Dshi_4115at 47.584 kb on - strand, within Dshi_4115at 47.584 kb on - strand, within Dshi_4115at 47.607 kb on + strand, within Dshi_4115at 47.670 kb on + strand, within Dshi_4115at 47.757 kb on - strand, within Dshi_4115at 47.796 kb on + strand, within Dshi_4115at 47.979 kb on - strandat 48.194 kb on + strand, within Dshi_4116at 48.296 kb on - strand, within Dshi_4116at 48.427 kb on + strand, within Dshi_4116at 48.526 kb on + strand, within Dshi_4116at 48.592 kb on + strand, within Dshi_4116at 48.627 kb on + strand, within Dshi_4116at 48.879 kb on - strandat 49.199 kb on + strand, within Dshi_4117at 49.279 kb on + strand, within Dshi_4117at 49.350 kb on + strand, within Dshi_4117at 49.485 kb on + strand, within Dshi_4117at 49.791 kb on + strandat 49.799 kb on - strandat 49.834 kb on + strand, within Dshi_4118

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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47,071 + -0.4
47,312 + Dshi_4115 0.32 -2.2
47,312 + Dshi_4115 0.32 -0.1
47,312 + Dshi_4115 0.32 -1.1
47,320 - Dshi_4115 0.33 -1.8
47,406 - Dshi_4115 0.41 +3.5
47,548 - Dshi_4115 0.55 -3.1
47,584 - Dshi_4115 0.58 +1.8
47,584 - Dshi_4115 0.58 -3.3
47,607 + Dshi_4115 0.60 +0.5
47,670 + Dshi_4115 0.66 +2.7
47,757 - Dshi_4115 0.75 -0.4
47,796 + Dshi_4115 0.79 +0.5
47,979 - +3.8
48,194 + Dshi_4116 0.21 -2.9
48,296 - Dshi_4116 0.33 -0.5
48,427 + Dshi_4116 0.49 +2.5
48,526 + Dshi_4116 0.60 -0.4
48,592 + Dshi_4116 0.68 +0.1
48,627 + Dshi_4116 0.73 +0.5
48,879 - +1.1
49,199 + Dshi_4117 0.40 +3.8
49,279 + Dshi_4117 0.50 +3.3
49,350 + Dshi_4117 0.58 +1.3
49,485 + Dshi_4117 0.74 -0.2
49,791 + -1.5
49,799 - -1.8
49,834 + Dshi_4118 0.10 -1.2

Or see this region's nucleotide sequence