Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3982 and Dshi_3983 are separated by 4 nucleotides Dshi_3983 and Dshi_3984 are separated by 187 nucleotides Dshi_3984 and Dshi_3985 are separated by 12 nucleotides
Dshi_3982: Dshi_3982 - conjugation TrbI family protein (RefSeq), at 40,545 to 41,924
_3982
Dshi_3983: Dshi_3983 - type II secretion system protein E (RefSeq), at 41,929 to 42,915
_3983
Dshi_3984: Dshi_3984 - hypothetical protein (RefSeq), at 43,103 to 43,513
_3984
Dshi_3985: Dshi_3985 - TrbL/VirB6 plasmid conjugal transfer protein (RefSeq), at 43,526 to 44,602
_3985
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.656 kb on + strand, within Dshi_3982 at 41.656 kb on + strand, within Dshi_3982 at 41.707 kb on + strand, within Dshi_3982 at 41.972 kb on - strand at 42.080 kb on + strand, within Dshi_3983 at 42.095 kb on - strand, within Dshi_3983 at 42.133 kb on - strand, within Dshi_3983 at 42.178 kb on - strand, within Dshi_3983 at 42.178 kb on - strand, within Dshi_3983 at 42.364 kb on + strand, within Dshi_3983 at 42.392 kb on - strand, within Dshi_3983 at 42.492 kb on + strand, within Dshi_3983 at 42.607 kb on - strand, within Dshi_3983 at 42.665 kb on + strand, within Dshi_3983 at 42.747 kb on - strand, within Dshi_3983 at 42.760 kb on + strand, within Dshi_3983 at 42.791 kb on - strand, within Dshi_3983 at 42.807 kb on - strand, within Dshi_3983 at 42.993 kb on - strand at 42.993 kb on - strand at 43.008 kb on - strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.009 kb on + strand at 43.081 kb on - strand at 43.351 kb on + strand, within Dshi_3984 at 43.376 kb on + strand, within Dshi_3984 at 43.485 kb on - strand at 43.510 kb on - strand at 43.556 kb on + strand at 43.569 kb on - strand at 43.588 kb on - strand at 43.591 kb on + strand at 43.599 kb on - strand at 43.605 kb on + strand at 43.620 kb on - strand at 43.628 kb on + strand at 43.646 kb on + strand, within Dshi_3985 at 43.765 kb on + strand, within Dshi_3985 at 43.765 kb on + strand, within Dshi_3985 at 43.785 kb on - strand, within Dshi_3985 at 43.790 kb on + strand, within Dshi_3985 at 43.800 kb on - strand, within Dshi_3985 at 43.814 kb on - strand, within Dshi_3985 at 43.815 kb on - strand, within Dshi_3985 at 43.853 kb on - strand, within Dshi_3985 at 43.853 kb on - strand, within Dshi_3985 at 43.853 kb on - strand, within Dshi_3985
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 41,656 + Dshi_3982 0.81 +1.0 41,656 + Dshi_3982 0.81 -1.1 41,707 + Dshi_3982 0.84 -0.4 41,972 - -0.4 42,080 + Dshi_3983 0.15 -1.2 42,095 - Dshi_3983 0.17 +1.0 42,133 - Dshi_3983 0.21 -0.0 42,178 - Dshi_3983 0.25 -1.0 42,178 - Dshi_3983 0.25 -2.1 42,364 + Dshi_3983 0.44 -2.2 42,392 - Dshi_3983 0.47 +0.1 42,492 + Dshi_3983 0.57 -2.0 42,607 - Dshi_3983 0.69 -2.6 42,665 + Dshi_3983 0.75 -1.2 42,747 - Dshi_3983 0.83 +1.5 42,760 + Dshi_3983 0.84 -0.7 42,791 - Dshi_3983 0.87 -1.5 42,807 - Dshi_3983 0.89 -0.2 42,993 - -0.3 42,993 - -2.7 43,008 - +0.9 43,009 + -3.0 43,009 + +0.5 43,009 + -0.8 43,009 + -1.6 43,009 + -0.7 43,081 - +0.4 43,351 + Dshi_3984 0.60 -0.1 43,376 + Dshi_3984 0.66 +0.5 43,485 - -2.3 43,510 - -0.2 43,556 + +1.9 43,569 - +0.3 43,588 - +0.4 43,591 + +0.6 43,599 - +1.5 43,605 + -0.5 43,620 - -1.6 43,628 + +0.3 43,646 + Dshi_3985 0.11 +0.1 43,765 + Dshi_3985 0.22 -2.4 43,765 + Dshi_3985 0.22 -0.6 43,785 - Dshi_3985 0.24 +1.9 43,790 + Dshi_3985 0.25 +0.4 43,800 - Dshi_3985 0.25 -1.4 43,814 - Dshi_3985 0.27 -1.0 43,815 - Dshi_3985 0.27 +0.7 43,853 - Dshi_3985 0.30 -1.8 43,853 - Dshi_3985 0.30 -2.0 43,853 - Dshi_3985 0.30 +0.4
Or see this region's nucleotide sequence