Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3848 and Dshi_3849 are separated by 27 nucleotides Dshi_3849 and Dshi_3850 are separated by 7 nucleotides Dshi_3850 and Dshi_3851 are separated by 63 nucleotides Dshi_3851 and Dshi_3852 are separated by 160 nucleotides Dshi_3852 and Dshi_3853 are separated by 139 nucleotides
Dshi_3848: Dshi_3848 - hypothetical protein (RefSeq), at 55,886 to 56,080
_3848
Dshi_3849: Dshi_3849 - hypothetical protein (RefSeq), at 56,108 to 56,320
_3849
Dshi_3850: Dshi_3850 - hypothetical protein (RefSeq), at 56,328 to 56,588
_3850
Dshi_3851: Dshi_3851 - hypothetical protein (RefSeq), at 56,652 to 56,915
_3851
Dshi_3852: Dshi_3852 - hypothetical protein (RefSeq), at 57,076 to 58,143
_3852
Dshi_3853: Dshi_3853 - Resolvase domain (RefSeq), at 58,283 to 59,263
_3853
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 56.085 kb on - strand at 56.088 kb on + strand at 56.089 kb on + strand at 56.097 kb on - strand at 56.098 kb on + strand at 56.098 kb on + strand at 56.098 kb on + strand at 56.106 kb on - strand at 56.108 kb on - strand at 56.108 kb on - strand at 56.113 kb on - strand at 56.114 kb on - strand at 56.127 kb on + strand at 56.132 kb on + strand, within Dshi_3849 at 56.155 kb on + strand, within Dshi_3849 at 56.181 kb on - strand, within Dshi_3849 at 56.181 kb on - strand, within Dshi_3849 at 56.206 kb on + strand, within Dshi_3849 at 56.215 kb on - strand, within Dshi_3849 at 56.241 kb on + strand, within Dshi_3849 at 56.249 kb on - strand, within Dshi_3849 at 56.254 kb on - strand, within Dshi_3849 at 56.324 kb on + strand at 56.326 kb on + strand at 56.327 kb on - strand at 56.354 kb on + strand, within Dshi_3850 at 56.372 kb on - strand, within Dshi_3850 at 56.396 kb on + strand, within Dshi_3850 at 56.404 kb on - strand, within Dshi_3850 at 56.414 kb on - strand, within Dshi_3850 at 56.414 kb on - strand, within Dshi_3850 at 56.441 kb on - strand, within Dshi_3850 at 56.447 kb on - strand, within Dshi_3850 at 56.497 kb on - strand, within Dshi_3850 at 56.509 kb on + strand, within Dshi_3850 at 56.560 kb on + strand, within Dshi_3850 at 56.568 kb on - strand at 56.643 kb on + strand at 56.711 kb on + strand, within Dshi_3851 at 56.754 kb on + strand, within Dshi_3851 at 56.762 kb on - strand, within Dshi_3851 at 56.785 kb on - strand, within Dshi_3851 at 56.835 kb on + strand, within Dshi_3851 at 56.836 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.856 kb on + strand, within Dshi_3851 at 56.872 kb on - strand, within Dshi_3851 at 56.887 kb on - strand, within Dshi_3851 at 56.887 kb on - strand, within Dshi_3851 at 56.892 kb on - strand at 57.006 kb on + strand at 57.007 kb on + strand at 57.014 kb on - strand at 57.015 kb on - strand at 57.160 kb on + strand at 57.160 kb on + strand at 57.168 kb on - strand at 57.195 kb on - strand, within Dshi_3852 at 57.299 kb on + strand, within Dshi_3852 at 57.299 kb on + strand, within Dshi_3852 at 57.333 kb on - strand, within Dshi_3852 at 57.651 kb on - strand, within Dshi_3852 at 57.800 kb on + strand, within Dshi_3852 at 57.938 kb on + strand, within Dshi_3852 at 58.241 kb on + strand at 58.258 kb on + strand at 58.286 kb on + strand at 58.296 kb on + strand at 58.738 kb on + strand, within Dshi_3853 at 58.796 kb on - strand, within Dshi_3853 at 58.835 kb on - strand, within Dshi_3853 at 58.851 kb on + strand, within Dshi_3853 at 58.859 kb on - strand, within Dshi_3853 at 58.882 kb on + strand, within Dshi_3853 at 58.890 kb on - strand, within Dshi_3853 at 58.890 kb on - strand, within Dshi_3853 at 58.996 kb on - strand, within Dshi_3853 at 59.003 kb on + strand, within Dshi_3853 at 59.025 kb on + strand, within Dshi_3853 at 59.033 kb on - strand, within Dshi_3853 at 59.062 kb on + strand, within Dshi_3853
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 56,085 - +1.6 56,088 + -3.0 56,089 + -2.0 56,097 - -1.0 56,098 + -1.4 56,098 + -1.5 56,098 + -2.0 56,106 - -3.3 56,108 - +2.0 56,108 - -0.6 56,113 - -0.3 56,114 - +1.4 56,127 + -0.5 56,132 + Dshi_3849 0.11 +1.0 56,155 + Dshi_3849 0.22 +2.0 56,181 - Dshi_3849 0.34 -0.5 56,181 - Dshi_3849 0.34 +0.3 56,206 + Dshi_3849 0.46 -0.9 56,215 - Dshi_3849 0.50 -0.5 56,241 + Dshi_3849 0.62 -2.2 56,249 - Dshi_3849 0.66 -1.0 56,254 - Dshi_3849 0.69 -1.8 56,324 + +1.0 56,326 + -0.4 56,327 - -1.0 56,354 + Dshi_3850 0.10 -2.6 56,372 - Dshi_3850 0.17 +0.5 56,396 + Dshi_3850 0.26 +0.7 56,404 - Dshi_3850 0.29 +1.0 56,414 - Dshi_3850 0.33 -1.4 56,414 - Dshi_3850 0.33 +0.1 56,441 - Dshi_3850 0.43 -1.4 56,447 - Dshi_3850 0.46 -2.5 56,497 - Dshi_3850 0.65 -2.1 56,509 + Dshi_3850 0.69 -1.3 56,560 + Dshi_3850 0.89 +2.0 56,568 - -1.2 56,643 + -2.6 56,711 + Dshi_3851 0.22 +4.1 56,754 + Dshi_3851 0.39 +0.7 56,762 - Dshi_3851 0.42 -0.9 56,785 - Dshi_3851 0.50 -3.0 56,835 + Dshi_3851 0.69 +1.2 56,836 + Dshi_3851 0.70 +1.4 56,856 + Dshi_3851 0.77 -3.2 56,856 + Dshi_3851 0.77 -0.7 56,856 + Dshi_3851 0.77 +0.4 56,856 + Dshi_3851 0.77 +1.5 56,856 + Dshi_3851 0.77 +1.0 56,872 - Dshi_3851 0.83 -3.2 56,887 - Dshi_3851 0.89 -0.4 56,887 - Dshi_3851 0.89 -1.6 56,892 - -1.4 57,006 + +0.1 57,007 + -2.5 57,014 - +1.0 57,015 - +0.7 57,160 + +1.0 57,160 + -3.0 57,168 - -0.7 57,195 - Dshi_3852 0.11 +0.1 57,299 + Dshi_3852 0.21 -3.9 57,299 + Dshi_3852 0.21 -0.4 57,333 - Dshi_3852 0.24 -0.0 57,651 - Dshi_3852 0.54 +0.1 57,800 + Dshi_3852 0.68 -1.2 57,938 + Dshi_3852 0.81 -1.0 58,241 + -1.0 58,258 + +1.0 58,286 + -0.4 58,296 + -0.0 58,738 + Dshi_3853 0.46 -2.7 58,796 - Dshi_3853 0.52 +2.0 58,835 - Dshi_3853 0.56 -0.6 58,851 + Dshi_3853 0.58 -0.1 58,859 - Dshi_3853 0.59 -0.0 58,882 + Dshi_3853 0.61 -0.4 58,890 - Dshi_3853 0.62 -0.9 58,890 - Dshi_3853 0.62 -0.1 58,996 - Dshi_3853 0.73 -1.4 59,003 + Dshi_3853 0.73 -1.0 59,025 + Dshi_3853 0.76 -0.9 59,033 - Dshi_3853 0.76 +1.0 59,062 + Dshi_3853 0.79 -0.0
Or see this region's nucleotide sequence