Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3833 and Dshi_3834 overlap by 11 nucleotides Dshi_3834 and Dshi_3835 overlap by 26 nucleotides Dshi_3835 and Dshi_3836 overlap by 4 nucleotides Dshi_3836 and Dshi_3837 are separated by 136 nucleotides
Dshi_3833: Dshi_3833 - phospholipase D/Transphosphatidylase (RefSeq), at 41,763 to 43,181
_3833
Dshi_3834: Dshi_3834 - signal transduction histidine kinase (RefSeq), at 43,171 to 44,907
_3834
Dshi_3835: Dshi_3835 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 44,882 to 45,445
_3835
Dshi_3836: Dshi_3836 - hypothetical protein (RefSeq), at 45,442 to 45,621
_3836
Dshi_3837: Dshi_3837 - response regulator receiver and SARP domain protein (RefSeq), at 45,758 to 46,573
_3837
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.330 kb on + strand, within Dshi_3833 at 42.429 kb on - strand, within Dshi_3833 at 42.456 kb on + strand, within Dshi_3833 at 42.542 kb on + strand, within Dshi_3833 at 42.593 kb on + strand, within Dshi_3833 at 42.593 kb on + strand, within Dshi_3833 at 42.683 kb on + strand, within Dshi_3833 at 42.684 kb on + strand, within Dshi_3833 at 42.764 kb on - strand, within Dshi_3833 at 42.786 kb on - strand, within Dshi_3833 at 42.856 kb on - strand, within Dshi_3833 at 42.856 kb on - strand, within Dshi_3833 at 43.012 kb on - strand, within Dshi_3833 at 43.047 kb on - strand at 43.049 kb on + strand at 43.218 kb on + strand at 43.218 kb on + strand at 43.226 kb on - strand at 43.380 kb on - strand, within Dshi_3834 at 43.400 kb on - strand, within Dshi_3834 at 43.477 kb on - strand, within Dshi_3834 at 43.496 kb on + strand, within Dshi_3834 at 43.499 kb on - strand, within Dshi_3834 at 43.504 kb on - strand, within Dshi_3834 at 43.667 kb on - strand, within Dshi_3834 at 43.715 kb on + strand, within Dshi_3834 at 43.765 kb on - strand, within Dshi_3834 at 43.779 kb on - strand, within Dshi_3834 at 43.817 kb on - strand, within Dshi_3834 at 43.851 kb on - strand, within Dshi_3834 at 44.003 kb on - strand, within Dshi_3834 at 44.024 kb on - strand, within Dshi_3834 at 44.128 kb on - strand, within Dshi_3834 at 44.138 kb on + strand, within Dshi_3834 at 44.208 kb on - strand, within Dshi_3834 at 44.251 kb on - strand, within Dshi_3834 at 44.256 kb on + strand, within Dshi_3834 at 44.267 kb on + strand, within Dshi_3834 at 44.280 kb on - strand, within Dshi_3834 at 44.295 kb on - strand, within Dshi_3834 at 44.365 kb on - strand, within Dshi_3834 at 44.446 kb on - strand, within Dshi_3834 at 44.480 kb on + strand, within Dshi_3834 at 44.542 kb on + strand, within Dshi_3834 at 44.551 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.715 kb on - strand, within Dshi_3834 at 44.752 kb on + strand at 44.879 kb on + strand at 44.879 kb on + strand at 44.917 kb on + strand at 44.958 kb on + strand, within Dshi_3835 at 44.985 kb on - strand, within Dshi_3835 at 45.255 kb on + strand, within Dshi_3835 at 45.258 kb on - strand, within Dshi_3835 at 45.312 kb on + strand, within Dshi_3835 at 45.320 kb on - strand, within Dshi_3835 at 45.320 kb on - strand, within Dshi_3835 at 45.321 kb on + strand, within Dshi_3835 at 45.426 kb on + strand at 45.519 kb on - strand, within Dshi_3836 at 45.534 kb on - strand, within Dshi_3836 at 45.545 kb on - strand, within Dshi_3836 at 45.623 kb on - strand at 45.623 kb on - strand at 45.624 kb on - strand at 45.664 kb on - strand at 45.759 kb on + strand at 45.771 kb on + strand at 45.801 kb on - strand at 45.857 kb on + strand, within Dshi_3837 at 45.870 kb on - strand, within Dshi_3837
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 42,330 + Dshi_3833 0.40 +1.0 42,429 - Dshi_3833 0.47 +2.2 42,456 + Dshi_3833 0.49 +2.1 42,542 + Dshi_3833 0.55 -1.4 42,593 + Dshi_3833 0.58 -0.0 42,593 + Dshi_3833 0.58 -1.4 42,683 + Dshi_3833 0.65 -1.0 42,684 + Dshi_3833 0.65 +0.7 42,764 - Dshi_3833 0.71 +1.0 42,786 - Dshi_3833 0.72 -2.9 42,856 - Dshi_3833 0.77 +1.4 42,856 - Dshi_3833 0.77 -0.0 43,012 - Dshi_3833 0.88 -0.5 43,047 - +0.2 43,049 + +1.0 43,218 + +1.1 43,218 + +0.2 43,226 - -0.0 43,380 - Dshi_3834 0.12 +1.5 43,400 - Dshi_3834 0.13 +1.0 43,477 - Dshi_3834 0.18 -0.6 43,496 + Dshi_3834 0.19 +2.3 43,499 - Dshi_3834 0.19 +1.2 43,504 - Dshi_3834 0.19 -0.8 43,667 - Dshi_3834 0.29 +2.0 43,715 + Dshi_3834 0.31 -0.5 43,765 - Dshi_3834 0.34 -1.6 43,779 - Dshi_3834 0.35 -2.2 43,817 - Dshi_3834 0.37 +0.6 43,851 - Dshi_3834 0.39 -2.0 44,003 - Dshi_3834 0.48 +0.2 44,024 - Dshi_3834 0.49 -3.4 44,128 - Dshi_3834 0.55 -0.4 44,138 + Dshi_3834 0.56 -1.2 44,208 - Dshi_3834 0.60 +0.4 44,251 - Dshi_3834 0.62 -0.0 44,256 + Dshi_3834 0.62 -1.2 44,267 + Dshi_3834 0.63 -1.2 44,280 - Dshi_3834 0.64 +1.0 44,295 - Dshi_3834 0.65 +2.0 44,365 - Dshi_3834 0.69 +2.1 44,446 - Dshi_3834 0.73 -1.7 44,480 + Dshi_3834 0.75 -0.8 44,542 + Dshi_3834 0.79 -1.5 44,551 - Dshi_3834 0.79 +1.1 44,715 - Dshi_3834 0.89 -2.0 44,715 - Dshi_3834 0.89 -0.0 44,715 - Dshi_3834 0.89 +0.2 44,752 + -1.0 44,879 + -0.3 44,879 + +0.0 44,917 + -1.2 44,958 + Dshi_3835 0.13 -2.0 44,985 - Dshi_3835 0.18 -0.0 45,255 + Dshi_3835 0.66 -2.0 45,258 - Dshi_3835 0.67 +1.2 45,312 + Dshi_3835 0.76 -1.0 45,320 - Dshi_3835 0.78 -0.5 45,320 - Dshi_3835 0.78 -2.2 45,321 + Dshi_3835 0.78 +1.0 45,426 + +0.2 45,519 - Dshi_3836 0.43 +1.0 45,534 - Dshi_3836 0.51 -2.6 45,545 - Dshi_3836 0.57 +1.0 45,623 - -1.0 45,623 - -0.8 45,624 - +0.6 45,664 - -2.5 45,759 + -2.0 45,771 + +1.0 45,801 - +1.0 45,857 + Dshi_3837 0.12 -1.2 45,870 - Dshi_3837 0.14 +0.6
Or see this region's nucleotide sequence