Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3827 and Dshi_3828 are separated by 37 nucleotides Dshi_3828 and Dshi_3829 are separated by 127 nucleotides Dshi_3829 and Dshi_3830 are separated by 305 nucleotides
Dshi_3827: Dshi_3827 - phenylacetic acid degradation protein paaN (RefSeq), at 34,493 to 36,529
_3827
Dshi_3828: Dshi_3828 - putative transcriptional regulator, PaaX family (RefSeq), at 36,567 to 37,361
_3828
Dshi_3829: Dshi_3829 - hypothetical protein (RefSeq), at 37,489 to 37,941
_3829
Dshi_3830: Dshi_3830 - Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (RefSeq), at 38,247 to 39,386
_3830
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.583 kb on - strand, within Dshi_3827 at 35.594 kb on - strand, within Dshi_3827 at 35.594 kb on - strand, within Dshi_3827 at 35.907 kb on + strand, within Dshi_3827 at 35.917 kb on + strand, within Dshi_3827 at 35.963 kb on - strand, within Dshi_3827 at 36.018 kb on + strand, within Dshi_3827 at 36.072 kb on + strand, within Dshi_3827 at 36.155 kb on + strand, within Dshi_3827 at 36.336 kb on - strand at 36.432 kb on - strand at 36.575 kb on - strand at 36.612 kb on + strand at 36.626 kb on + strand at 36.626 kb on + strand at 36.644 kb on - strand at 36.668 kb on + strand, within Dshi_3828 at 36.691 kb on - strand, within Dshi_3828 at 36.696 kb on - strand, within Dshi_3828 at 36.798 kb on + strand, within Dshi_3828 at 36.923 kb on + strand, within Dshi_3828 at 36.941 kb on - strand, within Dshi_3828 at 37.064 kb on - strand, within Dshi_3828 at 37.080 kb on + strand, within Dshi_3828 at 37.102 kb on + strand, within Dshi_3828 at 37.255 kb on + strand, within Dshi_3828 at 37.263 kb on - strand, within Dshi_3828 at 37.270 kb on + strand, within Dshi_3828 at 37.365 kb on - strand at 37.454 kb on - strand at 37.511 kb on + strand at 37.517 kb on + strand at 37.568 kb on + strand, within Dshi_3829 at 37.586 kb on + strand, within Dshi_3829 at 37.594 kb on - strand, within Dshi_3829 at 37.643 kb on + strand, within Dshi_3829 at 37.653 kb on + strand, within Dshi_3829 at 37.694 kb on - strand, within Dshi_3829 at 37.748 kb on + strand, within Dshi_3829 at 37.756 kb on - strand, within Dshi_3829 at 37.879 kb on + strand, within Dshi_3829 at 37.981 kb on + strand at 37.989 kb on - strand at 38.109 kb on + strand at 38.136 kb on - strand at 38.156 kb on - strand at 38.212 kb on - strand at 38.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 35,583 - Dshi_3827 0.54 -2.9 35,594 - Dshi_3827 0.54 +1.0 35,594 - Dshi_3827 0.54 +0.5 35,907 + Dshi_3827 0.69 -1.4 35,917 + Dshi_3827 0.70 -2.5 35,963 - Dshi_3827 0.72 -1.4 36,018 + Dshi_3827 0.75 +2.0 36,072 + Dshi_3827 0.78 +2.0 36,155 + Dshi_3827 0.82 +1.0 36,336 - +1.0 36,432 - -2.6 36,575 - -0.6 36,612 + -1.9 36,626 + -1.0 36,626 + -0.9 36,644 - -1.0 36,668 + Dshi_3828 0.13 -0.3 36,691 - Dshi_3828 0.16 -1.6 36,696 - Dshi_3828 0.16 +1.0 36,798 + Dshi_3828 0.29 -1.4 36,923 + Dshi_3828 0.45 +0.9 36,941 - Dshi_3828 0.47 -1.0 37,064 - Dshi_3828 0.63 +1.0 37,080 + Dshi_3828 0.65 -1.0 37,102 + Dshi_3828 0.67 -1.6 37,255 + Dshi_3828 0.87 -0.9 37,263 - Dshi_3828 0.88 -0.0 37,270 + Dshi_3828 0.88 -0.8 37,365 - +1.0 37,454 - +2.0 37,511 + -0.6 37,517 + -3.2 37,568 + Dshi_3829 0.17 -0.8 37,586 + Dshi_3829 0.21 +0.3 37,594 - Dshi_3829 0.23 -1.9 37,643 + Dshi_3829 0.34 +1.0 37,653 + Dshi_3829 0.36 +0.0 37,694 - Dshi_3829 0.45 +0.5 37,748 + Dshi_3829 0.57 -0.5 37,756 - Dshi_3829 0.59 -0.1 37,879 + Dshi_3829 0.86 +1.0 37,981 + +1.7 37,989 - -0.6 38,109 + +2.1 38,136 - +0.5 38,156 - -2.0 38,212 - +1.8 38,352 + -0.4
Or see this region's nucleotide sequence