Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3795 and Dshi_3796 overlap by 4 nucleotides Dshi_3796 and Dshi_3797 overlap by 4 nucleotides Dshi_3797 and Dshi_3798 overlap by 4 nucleotides Dshi_3798 and Dshi_3799 are separated by 125 nucleotides
Dshi_3795: Dshi_3795 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 3,746 to 4,741
_3795
Dshi_3796: Dshi_3796 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 4,738 to 5,739
_3796
Dshi_3797: Dshi_3797 - Asp/Glu racemase (RefSeq), at 5,736 to 6,419
_3797
Dshi_3798: Dshi_3798 - NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (RefSeq), at 6,416 to 6,958
_3798
Dshi_3799: Dshi_3799 - HupE/UreJ protein (RefSeq), at 7,084 to 7,680
_3799
Position (kb) 5
6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4.742 kb on + strand at 4.744 kb on - strand at 4.774 kb on - strand at 4.792 kb on + strand at 4.977 kb on - strand, within Dshi_3796 at 5.060 kb on - strand, within Dshi_3796 at 5.110 kb on - strand, within Dshi_3796 at 5.247 kb on - strand, within Dshi_3796 at 5.252 kb on + strand, within Dshi_3796 at 5.302 kb on + strand, within Dshi_3796 at 5.307 kb on + strand, within Dshi_3796 at 5.413 kb on + strand, within Dshi_3796 at 5.458 kb on - strand, within Dshi_3796 at 5.607 kb on + strand, within Dshi_3796 at 5.769 kb on - strand at 5.772 kb on + strand at 5.803 kb on - strand at 5.853 kb on - strand at 5.921 kb on + strand, within Dshi_3797 at 5.931 kb on + strand, within Dshi_3797 at 5.939 kb on - strand, within Dshi_3797 at 5.944 kb on + strand, within Dshi_3797 at 5.968 kb on + strand, within Dshi_3797 at 6.091 kb on - strand, within Dshi_3797 at 6.269 kb on - strand, within Dshi_3797 at 6.458 kb on + strand at 6.560 kb on + strand, within Dshi_3798 at 6.680 kb on - strand, within Dshi_3798 at 6.761 kb on - strand, within Dshi_3798 at 6.909 kb on - strand at 6.914 kb on - strand at 6.965 kb on + strand at 7.195 kb on + strand, within Dshi_3799 at 7.251 kb on + strand, within Dshi_3799 at 7.393 kb on + strand, within Dshi_3799
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 4,742 + -2.0 4,744 - +2.0 4,774 - -2.0 4,792 + -0.4 4,977 - Dshi_3796 0.24 -1.5 5,060 - Dshi_3796 0.32 -1.7 5,110 - Dshi_3796 0.37 -0.6 5,247 - Dshi_3796 0.51 -1.8 5,252 + Dshi_3796 0.51 +0.1 5,302 + Dshi_3796 0.56 +1.0 5,307 + Dshi_3796 0.57 -1.6 5,413 + Dshi_3796 0.67 -0.3 5,458 - Dshi_3796 0.72 -2.5 5,607 + Dshi_3796 0.87 +2.3 5,769 - +2.3 5,772 + -2.0 5,803 - +3.0 5,853 - -0.0 5,921 + Dshi_3797 0.27 -1.5 5,931 + Dshi_3797 0.29 +0.7 5,939 - Dshi_3797 0.30 +2.5 5,944 + Dshi_3797 0.30 -1.4 5,968 + Dshi_3797 0.34 -0.0 6,091 - Dshi_3797 0.52 -0.0 6,269 - Dshi_3797 0.78 -1.0 6,458 + -0.9 6,560 + Dshi_3798 0.27 +2.5 6,680 - Dshi_3798 0.49 +3.3 6,761 - Dshi_3798 0.64 +2.0 6,909 - -1.0 6,914 - -1.7 6,965 + -1.6 7,195 + Dshi_3799 0.19 -4.0 7,251 + Dshi_3799 0.28 -1.9 7,393 + Dshi_3799 0.52 +0.4
Or see this region's nucleotide sequence