Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3696 and Dshi_3697 overlap by 4 nucleotides Dshi_3697 and Dshi_3698 overlap by 4 nucleotides Dshi_3698 and Dshi_3699 are separated by 123 nucleotides
Dshi_3696: Dshi_3696 - integrase family protein (RefSeq), at 100,305 to 101,309
_3696
Dshi_3697: Dshi_3697 - integrase family protein (RefSeq), at 101,306 to 102,217
_3697
Dshi_3698: Dshi_3698 - integrase family protein (RefSeq), at 102,214 to 103,740
_3698
Dshi_3699: Dshi_3699 - putative methylase/helicase (RefSeq), at 103,864 to 106,374
_3699
Position (kb) 102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 103.873 kb on + strand at 103.905 kb on + strand at 103.905 kb on + strand at 103.932 kb on - strand at 103.941 kb on - strand at 103.992 kb on + strand at 103.996 kb on - strand at 104.003 kb on + strand at 104.242 kb on - strand, within Dshi_3699 at 104.252 kb on - strand, within Dshi_3699 at 104.260 kb on - strand, within Dshi_3699 at 104.309 kb on + strand, within Dshi_3699 at 104.309 kb on + strand, within Dshi_3699 at 104.314 kb on + strand, within Dshi_3699 at 104.391 kb on - strand, within Dshi_3699 at 104.402 kb on + strand, within Dshi_3699 at 104.415 kb on - strand, within Dshi_3699 at 104.469 kb on - strand, within Dshi_3699 at 104.545 kb on - strand, within Dshi_3699 at 104.550 kb on - strand, within Dshi_3699 at 104.555 kb on + strand, within Dshi_3699 at 104.555 kb on + strand, within Dshi_3699 at 104.563 kb on - strand, within Dshi_3699 at 104.572 kb on - strand, within Dshi_3699 at 104.572 kb on - strand, within Dshi_3699 at 104.600 kb on + strand, within Dshi_3699 at 104.600 kb on + strand, within Dshi_3699 at 104.600 kb on + strand, within Dshi_3699 at 104.627 kb on + strand, within Dshi_3699 at 104.635 kb on - strand, within Dshi_3699 at 104.635 kb on - strand, within Dshi_3699 at 104.656 kb on + strand, within Dshi_3699 at 104.659 kb on - strand, within Dshi_3699 at 104.708 kb on - strand, within Dshi_3699 at 104.712 kb on - strand, within Dshi_3699 at 104.738 kb on + strand, within Dshi_3699
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 103,873 + +0.3 103,905 + -2.0 103,905 + +0.2 103,932 - +0.7 103,941 - +3.8 103,992 + +0.1 103,996 - +0.5 104,003 + +0.4 104,242 - Dshi_3699 0.15 -0.4 104,252 - Dshi_3699 0.15 +0.4 104,260 - Dshi_3699 0.16 +0.3 104,309 + Dshi_3699 0.18 -0.2 104,309 + Dshi_3699 0.18 +0.7 104,314 + Dshi_3699 0.18 -3.6 104,391 - Dshi_3699 0.21 -0.9 104,402 + Dshi_3699 0.21 +0.0 104,415 - Dshi_3699 0.22 -0.5 104,469 - Dshi_3699 0.24 +0.1 104,545 - Dshi_3699 0.27 +1.7 104,550 - Dshi_3699 0.27 +0.2 104,555 + Dshi_3699 0.28 -0.2 104,555 + Dshi_3699 0.28 +0.0 104,563 - Dshi_3699 0.28 -2.7 104,572 - Dshi_3699 0.28 -0.8 104,572 - Dshi_3699 0.28 -1.2 104,600 + Dshi_3699 0.29 -0.6 104,600 + Dshi_3699 0.29 -0.7 104,600 + Dshi_3699 0.29 -2.2 104,627 + Dshi_3699 0.30 -0.6 104,635 - Dshi_3699 0.31 -3.2 104,635 - Dshi_3699 0.31 -0.2 104,656 + Dshi_3699 0.32 -1.6 104,659 - Dshi_3699 0.32 -3.6 104,708 - Dshi_3699 0.34 +0.8 104,712 - Dshi_3699 0.34 +0.3 104,738 + Dshi_3699 0.35 +0.1
Or see this region's nucleotide sequence