Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3576

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3574 and Dshi_3575 overlap by 1 nucleotidesDshi_3575 and Dshi_3576 overlap by 4 nucleotidesDshi_3576 and Dshi_3577 are separated by 141 nucleotides Dshi_3574: Dshi_3574 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,764,320 to 3,765,117 _3574 Dshi_3575: Dshi_3575 - 3-deoxy-D-manno-octulosonate cytidylyltransferase (RefSeq), at 3,765,117 to 3,765,917 _3575 Dshi_3576: Dshi_3576 - glycosyl transferase family 2 (RefSeq), at 3,765,914 to 3,767,146 _3576 Dshi_3577: Dshi_3577 - UTP-glucose-1-phosphate uridylyltransferase (RefSeq), at 3,767,288 to 3,768,184 _3577 Position (kb) 3765 3766 3767 3768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3766.099 kb on - strand, within Dshi_3576at 3766.213 kb on - strand, within Dshi_3576at 3766.308 kb on + strand, within Dshi_3576at 3766.385 kb on + strand, within Dshi_3576at 3766.526 kb on - strand, within Dshi_3576at 3766.541 kb on + strand, within Dshi_3576at 3766.733 kb on + strand, within Dshi_3576at 3766.733 kb on + strand, within Dshi_3576at 3766.738 kb on + strand, within Dshi_3576at 3766.764 kb on + strand, within Dshi_3576at 3766.803 kb on - strand, within Dshi_3576at 3766.859 kb on - strand, within Dshi_3576at 3766.866 kb on - strand, within Dshi_3576at 3766.909 kb on - strand, within Dshi_3576at 3766.918 kb on + strand, within Dshi_3576at 3766.962 kb on - strand, within Dshi_3576at 3766.962 kb on - strand, within Dshi_3576at 3766.973 kb on + strand, within Dshi_3576at 3767.022 kb on + strand, within Dshi_3576at 3767.028 kb on + strandat 3767.154 kb on + strandat 3767.186 kb on - strandat 3767.188 kb on - strandat 3767.194 kb on + strandat 3767.202 kb on + strandat 3767.210 kb on - strandat 3767.210 kb on - strandat 3767.264 kb on - strandat 3767.264 kb on - strandat 3767.293 kb on + strandat 3767.301 kb on - strandat 3767.301 kb on - strandat 3767.750 kb on - strand, within Dshi_3577at 3767.828 kb on + strand, within Dshi_3577

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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3,766,099 - Dshi_3576 0.15 +1.1
3,766,213 - Dshi_3576 0.24 +1.1
3,766,308 + Dshi_3576 0.32 -0.9
3,766,385 + Dshi_3576 0.38 +1.1
3,766,526 - Dshi_3576 0.50 -0.9
3,766,541 + Dshi_3576 0.51 -0.5
3,766,733 + Dshi_3576 0.66 +2.7
3,766,733 + Dshi_3576 0.66 -1.7
3,766,738 + Dshi_3576 0.67 -1.9
3,766,764 + Dshi_3576 0.69 -0.1
3,766,803 - Dshi_3576 0.72 -1.7
3,766,859 - Dshi_3576 0.77 -2.2
3,766,866 - Dshi_3576 0.77 +1.1
3,766,909 - Dshi_3576 0.81 +3.4
3,766,918 + Dshi_3576 0.81 -0.3
3,766,962 - Dshi_3576 0.85 +1.1
3,766,962 - Dshi_3576 0.85 -1.5
3,766,973 + Dshi_3576 0.86 -0.9
3,767,022 + Dshi_3576 0.90 -2.5
3,767,028 + +1.1
3,767,154 + -1.5
3,767,186 - -3.1
3,767,188 - -1.5
3,767,194 + -0.4
3,767,202 + -0.9
3,767,210 - +0.1
3,767,210 - -1.7
3,767,264 - -1.5
3,767,264 - -1.0
3,767,293 + -1.5
3,767,301 - +1.1
3,767,301 - +0.1
3,767,750 - Dshi_3577 0.52 -2.5
3,767,828 + Dshi_3577 0.60 +1.1

Or see this region's nucleotide sequence