Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3574 and Dshi_3575 overlap by 1 nucleotides Dshi_3575 and Dshi_3576 overlap by 4 nucleotides Dshi_3576 and Dshi_3577 are separated by 141 nucleotides
Dshi_3574: Dshi_3574 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,764,320 to 3,765,117
_3574
Dshi_3575: Dshi_3575 - 3-deoxy-D-manno-octulosonate cytidylyltransferase (RefSeq), at 3,765,117 to 3,765,917
_3575
Dshi_3576: Dshi_3576 - glycosyl transferase family 2 (RefSeq), at 3,765,914 to 3,767,146
_3576
Dshi_3577: Dshi_3577 - UTP-glucose-1-phosphate uridylyltransferase (RefSeq), at 3,767,288 to 3,768,184
_3577
Position (kb)
3765
3766
3767
3768 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3766.099 kb on - strand, within Dshi_3576 at 3766.213 kb on - strand, within Dshi_3576 at 3766.308 kb on + strand, within Dshi_3576 at 3766.385 kb on + strand, within Dshi_3576 at 3766.526 kb on - strand, within Dshi_3576 at 3766.541 kb on + strand, within Dshi_3576 at 3766.733 kb on + strand, within Dshi_3576 at 3766.733 kb on + strand, within Dshi_3576 at 3766.738 kb on + strand, within Dshi_3576 at 3766.764 kb on + strand, within Dshi_3576 at 3766.803 kb on - strand, within Dshi_3576 at 3766.859 kb on - strand, within Dshi_3576 at 3766.866 kb on - strand, within Dshi_3576 at 3766.909 kb on - strand, within Dshi_3576 at 3766.918 kb on + strand, within Dshi_3576 at 3766.962 kb on - strand, within Dshi_3576 at 3766.962 kb on - strand, within Dshi_3576 at 3766.973 kb on + strand, within Dshi_3576 at 3767.022 kb on + strand, within Dshi_3576 at 3767.028 kb on + strand at 3767.154 kb on + strand at 3767.186 kb on - strand at 3767.188 kb on - strand at 3767.194 kb on + strand at 3767.202 kb on + strand at 3767.210 kb on - strand at 3767.210 kb on - strand at 3767.264 kb on - strand at 3767.264 kb on - strand at 3767.293 kb on + strand at 3767.301 kb on - strand at 3767.301 kb on - strand at 3767.750 kb on - strand, within Dshi_3577 at 3767.828 kb on + strand, within Dshi_3577
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,766,099 - Dshi_3576 0.15 +1.1 3,766,213 - Dshi_3576 0.24 +1.1 3,766,308 + Dshi_3576 0.32 -0.9 3,766,385 + Dshi_3576 0.38 +1.1 3,766,526 - Dshi_3576 0.50 -0.9 3,766,541 + Dshi_3576 0.51 -0.5 3,766,733 + Dshi_3576 0.66 +2.7 3,766,733 + Dshi_3576 0.66 -1.7 3,766,738 + Dshi_3576 0.67 -1.9 3,766,764 + Dshi_3576 0.69 -0.1 3,766,803 - Dshi_3576 0.72 -1.7 3,766,859 - Dshi_3576 0.77 -2.2 3,766,866 - Dshi_3576 0.77 +1.1 3,766,909 - Dshi_3576 0.81 +3.4 3,766,918 + Dshi_3576 0.81 -0.3 3,766,962 - Dshi_3576 0.85 +1.1 3,766,962 - Dshi_3576 0.85 -1.5 3,766,973 + Dshi_3576 0.86 -0.9 3,767,022 + Dshi_3576 0.90 -2.5 3,767,028 + +1.1 3,767,154 + -1.5 3,767,186 - -3.1 3,767,188 - -1.5 3,767,194 + -0.4 3,767,202 + -0.9 3,767,210 - +0.1 3,767,210 - -1.7 3,767,264 - -1.5 3,767,264 - -1.0 3,767,293 + -1.5 3,767,301 - +1.1 3,767,301 - +0.1 3,767,750 - Dshi_3577 0.52 -2.5 3,767,828 + Dshi_3577 0.60 +1.1
Or see this region's nucleotide sequence