Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3567

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3566 and Dshi_3567 are separated by 227 nucleotidesDshi_3567 and Dshi_3568 overlap by 22 nucleotides Dshi_3566: Dshi_3566 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,753,294 to 3,754,136 _3566 Dshi_3567: Dshi_3567 - preprotein translocase, SecA subunit (RefSeq), at 3,754,364 to 3,757,090 _3567 Dshi_3568: Dshi_3568 - OmpA domain protein (RefSeq), at 3,757,069 to 3,758,595 _3568 Position (kb) 3754 3755 3756 3757 3758Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3753.386 kb on - strand, within Dshi_3566at 3753.386 kb on - strand, within Dshi_3566at 3753.387 kb on + strand, within Dshi_3566at 3753.426 kb on + strand, within Dshi_3566at 3753.435 kb on - strand, within Dshi_3566at 3753.510 kb on - strand, within Dshi_3566at 3753.543 kb on - strand, within Dshi_3566at 3753.682 kb on + strand, within Dshi_3566at 3753.718 kb on - strand, within Dshi_3566at 3753.763 kb on + strand, within Dshi_3566at 3753.838 kb on + strand, within Dshi_3566at 3753.869 kb on + strand, within Dshi_3566at 3753.897 kb on - strand, within Dshi_3566at 3753.964 kb on + strand, within Dshi_3566at 3753.973 kb on + strand, within Dshi_3566at 3753.995 kb on - strand, within Dshi_3566at 3753.995 kb on - strand, within Dshi_3566at 3754.046 kb on - strand, within Dshi_3566at 3754.085 kb on + strandat 3754.088 kb on + strandat 3754.110 kb on + strandat 3757.199 kb on + strandat 3757.295 kb on + strand, within Dshi_3568at 3757.639 kb on - strand, within Dshi_3568at 3757.809 kb on - strand, within Dshi_3568at 3757.964 kb on - strand, within Dshi_3568at 3758.004 kb on - strand, within Dshi_3568at 3758.055 kb on + strand, within Dshi_3568at 3758.076 kb on - strand, within Dshi_3568

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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3,753,386 - Dshi_3566 0.11 +1.1
3,753,386 - Dshi_3566 0.11 +0.1
3,753,387 + Dshi_3566 0.11 -1.4
3,753,426 + Dshi_3566 0.16 -2.9
3,753,435 - Dshi_3566 0.17 -1.6
3,753,510 - Dshi_3566 0.26 -1.9
3,753,543 - Dshi_3566 0.30 -2.2
3,753,682 + Dshi_3566 0.46 -2.3
3,753,718 - Dshi_3566 0.50 -0.0
3,753,763 + Dshi_3566 0.56 -1.7
3,753,838 + Dshi_3566 0.65 -2.1
3,753,869 + Dshi_3566 0.68 -2.9
3,753,897 - Dshi_3566 0.72 -3.6
3,753,964 + Dshi_3566 0.79 -0.9
3,753,973 + Dshi_3566 0.81 -2.3
3,753,995 - Dshi_3566 0.83 +1.1
3,753,995 - Dshi_3566 0.83 -1.0
3,754,046 - Dshi_3566 0.89 -1.5
3,754,085 + -3.3
3,754,088 + +2.1
3,754,110 + -0.9
3,757,199 + -0.2
3,757,295 + Dshi_3568 0.15 +1.1
3,757,639 - Dshi_3568 0.37 +3.1
3,757,809 - Dshi_3568 0.48 +1.1
3,757,964 - Dshi_3568 0.59 +1.9
3,758,004 - Dshi_3568 0.61 -1.6
3,758,055 + Dshi_3568 0.65 +1.1
3,758,076 - Dshi_3568 0.66 +0.1

Or see this region's nucleotide sequence