Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3561 and Dshi_3562 are separated by 23 nucleotides Dshi_3562 and Dshi_3563 overlap by 4 nucleotides Dshi_3563 and Dshi_3564 are separated by 342 nucleotides Dshi_3564 and Dshi_3565 overlap by 4 nucleotides
Dshi_3561: Dshi_3561 - NusA antitermination factor (RefSeq), at 3,746,464 to 3,748,098
_3561
Dshi_3562: Dshi_3562 - protein of unknown function DUF448 (RefSeq), at 3,748,122 to 3,748,760
_3562
Dshi_3563: Dshi_3563 - translation initiation factor IF-2 (RefSeq), at 3,748,757 to 3,751,255
_3563
Dshi_3564: Dshi_3564 - mutator MutT protein (RefSeq), at 3,751,598 to 3,751,996
_3564
Dshi_3565: Dshi_3565 - arginine biosynthesis bifunctional protein ArgJ (RefSeq), at 3,751,993 to 3,753,216
_3565
Position (kb)
3748
3749
3750
3751
3752 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3751.253 kb on - strand at 3751.257 kb on - strand at 3751.363 kb on - strand at 3751.371 kb on - strand at 3751.445 kb on + strand at 3751.468 kb on + strand at 3751.479 kb on - strand at 3751.491 kb on - strand at 3751.491 kb on - strand at 3751.568 kb on + strand at 3751.568 kb on + strand at 3751.569 kb on + strand at 3751.577 kb on - strand at 3751.605 kb on - strand at 3751.655 kb on + strand, within Dshi_3564 at 3751.770 kb on - strand, within Dshi_3564 at 3751.772 kb on - strand, within Dshi_3564 at 3751.873 kb on + strand, within Dshi_3564 at 3751.928 kb on - strand, within Dshi_3564 at 3751.928 kb on - strand, within Dshi_3564 at 3751.933 kb on + strand, within Dshi_3564 at 3751.969 kb on - strand at 3752.081 kb on - strand at 3752.133 kb on + strand, within Dshi_3565 at 3752.242 kb on - strand, within Dshi_3565
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,751,253 - +0.2 3,751,257 - -3.1 3,751,363 - -0.1 3,751,371 - -2.8 3,751,445 + -0.3 3,751,468 + -0.6 3,751,479 - +1.1 3,751,491 - -1.7 3,751,491 - -0.9 3,751,568 + +0.1 3,751,568 + +0.1 3,751,569 + -0.5 3,751,577 - -0.8 3,751,605 - -1.6 3,751,655 + Dshi_3564 0.14 -0.9 3,751,770 - Dshi_3564 0.43 -2.8 3,751,772 - Dshi_3564 0.44 +3.7 3,751,873 + Dshi_3564 0.69 -1.2 3,751,928 - Dshi_3564 0.83 -1.4 3,751,928 - Dshi_3564 0.83 -0.9 3,751,933 + Dshi_3564 0.84 -2.3 3,751,969 - -1.5 3,752,081 - -2.3 3,752,133 + Dshi_3565 0.11 +1.9 3,752,242 - Dshi_3565 0.20 +0.5
Or see this region's nucleotide sequence