Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3425

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Chloramphenicol 0.0002 mg/ml
3,605,511	+		Dshi_3424	0.74	-3.4
3,605,519	-		Dshi_3424	0.74	+0.4
3,605,608	-		Dshi_3424	0.79	+0.7
3,605,626	+		Dshi_3424	0.80	+0.7
3,605,626	+		Dshi_3424	0.80	+0.1
3,605,634	-		Dshi_3424	0.80	-0.3
3,605,713	+		Dshi_3424	0.85	+0.1
3,605,721	-		Dshi_3424	0.85	-3.0
3,605,761	+				+3.5
3,605,761	+		Dshi_3424	0.87	-0.3
3,605,761	+		Dshi_3424	0.87	+1.6
3,605,769	-		Dshi_3424	0.88	+1.3
3,605,769	-		Dshi_3424	0.88	+0.6
3,605,769	-		Dshi_3424	0.88	+1.3
3,605,771	+		Dshi_3424	0.88	+0.8
3,605,771	+		Dshi_3424	0.88	+0.3
3,605,779	-		Dshi_3424	0.88	+0.1
3,605,779	-		Dshi_3424	0.88	+0.4
3,605,794	+		Dshi_3424	0.89	+2.6
3,605,796	-		Dshi_3424	0.89	-0.3
3,605,885	+				+0.9
3,605,887	-				-0.8
3,605,904	+				+0.6
3,605,943	+				+1.3
3,605,969	-				+0.3
3,605,969	-				+1.3
3,605,977	+				-0.9
3,605,977	-				-0.2
3,605,985	-				+0.5
3,605,985	-				+0.3
3,605,987	+				+0.5
3,606,053	+				+0.9
3,606,068	-				+5.5
3,606,077	-				+0.5
3,606,079	+				-0.0
3,606,084	+				-1.9
3,606,124	-				-2.3
3,606,185	-				+1.4
3,606,191	+				+1.8
3,606,191	+				+0.2
3,606,191	+				+1.2
3,606,196	+				+0.6
3,606,199	-				-0.9
3,606,209	-				+0.5
3,606,224	+				+0.9
3,606,226	+				+1.4
3,606,229	-				-2.9
3,606,232	-				+0.7
3,606,234	-				+0.3
3,606,234	-				-0.1
3,606,256	-				+3.1
3,606,284	+				+0.9
3,606,329	-				-0.1
3,606,330	+				+2.6
3,606,330	-				-1.5
3,606,344	+				-0.4
3,606,346	-				+1.1
3,606,360	+				-0.8
3,606,375	+				+0.0
3,606,375	+				+0.1
3,606,375	+				+0.6
3,606,381	-				+3.7
3,606,444	-				+1.0
3,606,463	-				+1.0
3,606,537	-		Dshi_3425	0.11	-0.1
3,606,543	+		Dshi_3425	0.12	+0.3
3,606,544	+		Dshi_3425	0.13	+0.8
3,606,547	-		Dshi_3425	0.13	-1.0
3,606,547	-		Dshi_3425	0.13	+1.9
3,606,547	-		Dshi_3425	0.13	-1.2
3,606,547	-		Dshi_3425	0.13	+0.4
3,606,552	-		Dshi_3425	0.15	+0.5
3,606,552	-		Dshi_3425	0.15	-0.5
3,606,552	-		Dshi_3425	0.15	+0.8
3,606,552	-		Dshi_3425	0.15	+2.4
3,606,554	-		Dshi_3425	0.15	-0.2
3,606,598	+		Dshi_3425	0.28	+0.2
3,606,599	+		Dshi_3425	0.29	-0.6
3,606,599	+		Dshi_3425	0.29	-1.4
3,606,599	+		Dshi_3425	0.29	-0.4
3,606,673	+		Dshi_3425	0.50	+0.3
3,606,673	-		Dshi_3425	0.50	+0.4
3,606,673	-		Dshi_3425	0.50	-2.3
3,606,681	-		Dshi_3425	0.53	-1.2
3,606,689	+		Dshi_3425	0.55	+0.7
3,606,697	-		Dshi_3425	0.57	-2.9
3,606,697	-		Dshi_3425	0.57	-0.5
3,606,697	-		Dshi_3425	0.57	+0.3
3,606,697	-		Dshi_3425	0.57	+1.0
3,606,702	-		Dshi_3425	0.59	+0.1
3,606,704	+		Dshi_3425	0.59	+0.6
3,606,721	-		Dshi_3425	0.64	-1.9
3,606,734	+		Dshi_3425	0.68	+0.3
3,606,742	-		Dshi_3425	0.70	-1.9
3,606,744	-		Dshi_3425	0.71	-2.3
3,606,813	-				-2.3
3,606,838	+				-2.5
3,606,846	-				+1.1
3,606,846	-				-1.3
3,606,846	-				-0.1
3,606,875	-				-0.9
3,606,915	-				-0.7
3,606,937	+				+2.1
3,606,945	-				-0.7
3,606,945	-				-1.4
3,606,945	-				-0.3
3,606,945	-				+2.4
3,606,952	+				-2.0
3,606,958	+				+0.2
3,607,001	-				-0.0
3,607,009	+				+0.2
3,607,009	+				+0.9
3,607,009	+				+2.5
3,607,039	-				+0.2
3,607,074	+				-2.3
3,607,082	-				+0.4
3,607,082	-				-2.0
3,607,086	-				-0.2
3,607,086	-				-0.9
3,607,128	+				+1.1
3,607,156	-				-1.6
3,607,157	-				+1.0
3,607,198	+		Dshi_3426	0.10	+0.3
3,607,200	+		Dshi_3426	0.10	+1.8
3,607,227	+		Dshi_3426	0.12	-0.2
3,607,235	-		Dshi_3426	0.13	-0.1
3,607,241	-		Dshi_3426	0.13	+2.9
3,607,254	+		Dshi_3426	0.14	-1.6
3,607,286	-		Dshi_3426	0.17	+1.8
3,607,334	+		Dshi_3426	0.20	-1.1
3,607,344	+		Dshi_3426	0.21	-3.0
3,607,462	-		Dshi_3426	0.29	-1.3
3,607,467	+		Dshi_3426	0.30	-0.6
3,607,499	-		Dshi_3426	0.32	-0.1
3,607,554	-		Dshi_3426	0.36	+2.1
3,607,564	-		Dshi_3426	0.37	+2.9
3,607,566	-		Dshi_3426	0.37	+0.1
3,607,581	-		Dshi_3426	0.38	+0.4
3,607,592	+		Dshi_3426	0.39	-0.5
3,607,592	+		Dshi_3426	0.39	-3.9
3,607,600	-		Dshi_3426	0.39	+0.2
3,607,627	+		Dshi_3426	0.41	-2.0
3,607,639	+		Dshi_3426	0.42	-0.7
3,607,639	+		Dshi_3426	0.42	+0.4
3,607,639	+		Dshi_3426	0.42	-1.7
3,607,647	-		Dshi_3426	0.43	-0.1
3,607,647	-		Dshi_3426	0.43	+0.3
3,607,647	-		Dshi_3426	0.43	+3.9
3,607,657	-		Dshi_3426	0.43	-1.0
3,607,668	+		Dshi_3426	0.44	-0.0
3,607,698	+		Dshi_3426	0.46	-0.0
3,607,698	+		Dshi_3426	0.46	+0.9
3,607,706	-		Dshi_3426	0.47	+2.7
3,607,743	+		Dshi_3426	0.50	-0.6