Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3295 and Dshi_3296 are separated by 3 nucleotides Dshi_3296 and Dshi_3297 overlap by 4 nucleotides Dshi_3297 and Dshi_3298 are separated by 27 nucleotides Dshi_3298 and Dshi_3299 are separated by 7 nucleotides
Dshi_3295: Dshi_3295 - Polyprenyl synthetase (RefSeq), at 3,461,924 to 3,462,799
_3295
Dshi_3296: Dshi_3296 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,462,803 to 3,463,045
_3296
Dshi_3297: Dshi_3297 - histone deacetylase superfamily (RefSeq), at 3,463,042 to 3,463,983
_3297
Dshi_3298: Dshi_3298 - hypothetical protein (RefSeq), at 3,464,011 to 3,464,559
_3298
Dshi_3299: Dshi_3299 - two component transcriptional regulator, winged helix family (RefSeq), at 3,464,567 to 3,465,280
_3299
Position (kb)
3463
3464 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3462.436 kb on + strand, within Dshi_3295 at 3462.836 kb on - strand, within Dshi_3296 at 3463.089 kb on + strand at 3463.097 kb on - strand at 3463.107 kb on - strand at 3463.112 kb on - strand at 3463.239 kb on + strand, within Dshi_3297 at 3463.357 kb on + strand, within Dshi_3297 at 3463.449 kb on + strand, within Dshi_3297 at 3463.655 kb on - strand, within Dshi_3297 at 3463.747 kb on + strand, within Dshi_3297 at 3463.762 kb on + strand, within Dshi_3297 at 3463.793 kb on - strand, within Dshi_3297 at 3463.917 kb on + strand at 3463.963 kb on + strand at 3463.963 kb on + strand at 3463.963 kb on + strand at 3463.971 kb on - strand at 3464.064 kb on - strand at 3464.133 kb on + strand, within Dshi_3298 at 3464.133 kb on + strand, within Dshi_3298 at 3464.141 kb on - strand, within Dshi_3298 at 3464.194 kb on + strand, within Dshi_3298 at 3464.270 kb on - strand, within Dshi_3298 at 3464.277 kb on - strand, within Dshi_3298 at 3464.333 kb on + strand, within Dshi_3298 at 3464.333 kb on + strand, within Dshi_3298 at 3464.381 kb on + strand, within Dshi_3298 at 3464.381 kb on + strand, within Dshi_3298 at 3464.417 kb on - strand, within Dshi_3298 at 3464.447 kb on + strand, within Dshi_3298 at 3464.455 kb on - strand, within Dshi_3298 at 3464.495 kb on + strand, within Dshi_3298 at 3464.524 kb on - strand at 3464.543 kb on + strand at 3464.551 kb on - strand at 3464.553 kb on + strand at 3464.582 kb on + strand at 3464.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,462,436 + Dshi_3295 0.58 +0.7 3,462,836 - Dshi_3296 0.14 +1.2 3,463,089 + -2.5 3,463,097 - +1.2 3,463,107 - +1.2 3,463,112 - -1.5 3,463,239 + Dshi_3297 0.21 +1.0 3,463,357 + Dshi_3297 0.33 -1.8 3,463,449 + Dshi_3297 0.43 +0.2 3,463,655 - Dshi_3297 0.65 +1.5 3,463,747 + Dshi_3297 0.75 +1.2 3,463,762 + Dshi_3297 0.76 +1.2 3,463,793 - Dshi_3297 0.80 +2.8 3,463,917 + +1.2 3,463,963 + +1.2 3,463,963 + +0.2 3,463,963 + +3.2 3,463,971 - -0.5 3,464,064 - +1.2 3,464,133 + Dshi_3298 0.22 +0.3 3,464,133 + Dshi_3298 0.22 -0.8 3,464,141 - Dshi_3298 0.24 +3.0 3,464,194 + Dshi_3298 0.33 -0.4 3,464,270 - Dshi_3298 0.47 +0.2 3,464,277 - Dshi_3298 0.48 -2.3 3,464,333 + Dshi_3298 0.59 -0.8 3,464,333 + Dshi_3298 0.59 -2.7 3,464,381 + Dshi_3298 0.67 +1.2 3,464,381 + Dshi_3298 0.67 -2.0 3,464,417 - Dshi_3298 0.74 -2.5 3,464,447 + Dshi_3298 0.79 +1.2 3,464,455 - Dshi_3298 0.81 -1.4 3,464,495 + Dshi_3298 0.88 -0.2 3,464,524 - +1.2 3,464,543 + -0.4 3,464,551 - +0.2 3,464,553 + -2.8 3,464,582 + -0.6 3,464,590 - +0.2
Or see this region's nucleotide sequence