Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3296

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3294 and Dshi_3295 are separated by 20 nucleotidesDshi_3295 and Dshi_3296 are separated by 3 nucleotidesDshi_3296 and Dshi_3297 overlap by 4 nucleotidesDshi_3297 and Dshi_3298 are separated by 27 nucleotides Dshi_3294: Dshi_3294 - deoxyxylulose-5-phosphate synthase (RefSeq), at 3,459,972 to 3,461,903 _3294 Dshi_3295: Dshi_3295 - Polyprenyl synthetase (RefSeq), at 3,461,924 to 3,462,799 _3295 Dshi_3296: Dshi_3296 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,462,803 to 3,463,045 _3296 Dshi_3297: Dshi_3297 - histone deacetylase superfamily (RefSeq), at 3,463,042 to 3,463,983 _3297 Dshi_3298: Dshi_3298 - hypothetical protein (RefSeq), at 3,464,011 to 3,464,559 _3298 Position (kb) 3462 3463 3464Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3461.825 kb on + strandat 3461.833 kb on - strandat 3462.436 kb on + strand, within Dshi_3295at 3462.836 kb on - strand, within Dshi_3296at 3463.089 kb on + strandat 3463.097 kb on - strandat 3463.107 kb on - strandat 3463.112 kb on - strandat 3463.239 kb on + strand, within Dshi_3297at 3463.357 kb on + strand, within Dshi_3297at 3463.449 kb on + strand, within Dshi_3297at 3463.655 kb on - strand, within Dshi_3297at 3463.747 kb on + strand, within Dshi_3297at 3463.762 kb on + strand, within Dshi_3297at 3463.793 kb on - strand, within Dshi_3297at 3463.917 kb on + strandat 3463.963 kb on + strandat 3463.963 kb on + strandat 3463.963 kb on + strandat 3463.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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3,461,825 + +1.2
3,461,833 - +1.4
3,462,436 + Dshi_3295 0.58 +0.7
3,462,836 - Dshi_3296 0.14 +1.2
3,463,089 + -2.5
3,463,097 - +1.2
3,463,107 - +1.2
3,463,112 - -1.5
3,463,239 + Dshi_3297 0.21 +1.0
3,463,357 + Dshi_3297 0.33 -1.8
3,463,449 + Dshi_3297 0.43 +0.2
3,463,655 - Dshi_3297 0.65 +1.5
3,463,747 + Dshi_3297 0.75 +1.2
3,463,762 + Dshi_3297 0.76 +1.2
3,463,793 - Dshi_3297 0.80 +2.8
3,463,917 + +1.2
3,463,963 + +1.2
3,463,963 + +0.2
3,463,963 + +3.2
3,463,971 - -0.5

Or see this region's nucleotide sequence