Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3148 and Dshi_3149 overlap by 4 nucleotides Dshi_3149 and Dshi_3150 are separated by 104 nucleotides Dshi_3150 and Dshi_3151 are separated by 40 nucleotides Dshi_3151 and Dshi_3152 are separated by 45 nucleotides
Dshi_3148: Dshi_3148 - hypothetical protein (RefSeq), at 3,314,700 to 3,315,176
_3148
Dshi_3149: Dshi_3149 - peptidase M15D vanX D-ala-D-ala dipeptidase (RefSeq), at 3,315,173 to 3,315,985
_3149
Dshi_3150: Dshi_3150 - aminotransferase class IV (RefSeq), at 3,316,090 to 3,316,944
_3150
Dshi_3151: Dshi_3151 - transcriptional regulator, LysR family (RefSeq), at 3,316,985 to 3,317,893
_3151
Dshi_3152: Dshi_3152 - protein of unknown function DUF1445 (RefSeq), at 3,317,939 to 3,318,841
_3152
Position (kb)
3316
3317 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3315.186 kb on + strand at 3315.191 kb on + strand at 3315.227 kb on + strand at 3315.294 kb on + strand, within Dshi_3149 at 3315.375 kb on + strand, within Dshi_3149 at 3315.385 kb on + strand, within Dshi_3149 at 3315.424 kb on - strand, within Dshi_3149 at 3315.487 kb on - strand, within Dshi_3149 at 3315.687 kb on + strand, within Dshi_3149 at 3315.807 kb on + strand, within Dshi_3149 at 3315.849 kb on + strand, within Dshi_3149 at 3315.978 kb on + strand at 3316.052 kb on + strand at 3316.085 kb on + strand at 3316.185 kb on - strand, within Dshi_3150 at 3316.190 kb on - strand, within Dshi_3150 at 3316.244 kb on + strand, within Dshi_3150 at 3316.245 kb on + strand, within Dshi_3150 at 3316.260 kb on + strand, within Dshi_3150 at 3316.316 kb on - strand, within Dshi_3150 at 3316.347 kb on - strand, within Dshi_3150 at 3316.358 kb on + strand, within Dshi_3150 at 3316.408 kb on - strand, within Dshi_3150 at 3316.440 kb on + strand, within Dshi_3150 at 3316.440 kb on + strand, within Dshi_3150 at 3316.448 kb on - strand, within Dshi_3150 at 3316.577 kb on - strand, within Dshi_3150 at 3316.596 kb on - strand, within Dshi_3150 at 3316.677 kb on - strand, within Dshi_3150 at 3316.969 kb on - strand at 3317.142 kb on - strand, within Dshi_3151 at 3317.166 kb on + strand, within Dshi_3151 at 3317.210 kb on - strand, within Dshi_3151 at 3317.222 kb on - strand, within Dshi_3151 at 3317.341 kb on + strand, within Dshi_3151 at 3317.346 kb on + strand, within Dshi_3151 at 3317.352 kb on + strand, within Dshi_3151 at 3317.495 kb on - strand, within Dshi_3151 at 3317.581 kb on + strand, within Dshi_3151 at 3317.623 kb on + strand, within Dshi_3151 at 3317.713 kb on - strand, within Dshi_3151 at 3317.713 kb on - strand, within Dshi_3151 at 3317.816 kb on + strand at 3317.840 kb on + strand at 3317.846 kb on + strand at 3317.941 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,315,186 + +0.7 3,315,191 + +0.1 3,315,227 + -0.1 3,315,294 + Dshi_3149 0.15 -0.2 3,315,375 + Dshi_3149 0.25 +3.0 3,315,385 + Dshi_3149 0.26 -0.2 3,315,424 - Dshi_3149 0.31 -2.1 3,315,487 - Dshi_3149 0.39 +0.7 3,315,687 + Dshi_3149 0.63 +1.6 3,315,807 + Dshi_3149 0.78 +1.4 3,315,849 + Dshi_3149 0.83 +2.0 3,315,978 + -0.2 3,316,052 + -2.7 3,316,085 + -0.5 3,316,185 - Dshi_3150 0.11 +1.8 3,316,190 - Dshi_3150 0.12 -0.2 3,316,244 + Dshi_3150 0.18 +0.4 3,316,245 + Dshi_3150 0.18 -0.3 3,316,260 + Dshi_3150 0.20 +1.4 3,316,316 - Dshi_3150 0.26 +0.4 3,316,347 - Dshi_3150 0.30 -1.6 3,316,358 + Dshi_3150 0.31 -2.1 3,316,408 - Dshi_3150 0.37 -3.1 3,316,440 + Dshi_3150 0.41 -2.2 3,316,440 + Dshi_3150 0.41 +2.8 3,316,448 - Dshi_3150 0.42 -1.9 3,316,577 - Dshi_3150 0.57 +3.4 3,316,596 - Dshi_3150 0.59 -0.0 3,316,677 - Dshi_3150 0.69 +2.4 3,316,969 - -0.6 3,317,142 - Dshi_3151 0.17 +0.4 3,317,166 + Dshi_3151 0.20 +0.1 3,317,210 - Dshi_3151 0.25 +1.4 3,317,222 - Dshi_3151 0.26 -1.6 3,317,341 + Dshi_3151 0.39 +1.4 3,317,346 + Dshi_3151 0.40 -0.0 3,317,352 + Dshi_3151 0.40 +0.0 3,317,495 - Dshi_3151 0.56 +1.4 3,317,581 + Dshi_3151 0.66 -2.0 3,317,623 + Dshi_3151 0.70 -0.6 3,317,713 - Dshi_3151 0.80 -0.2 3,317,713 - Dshi_3151 0.80 -3.4 3,317,816 + +1.7 3,317,840 + -0.2 3,317,846 + -2.1 3,317,941 + -3.4
Or see this region's nucleotide sequence