Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3057 and Dshi_3058 are separated by 288 nucleotides Dshi_3058 and Dshi_3059 are separated by 3 nucleotides
Dshi_3057: Dshi_3057 - MJ0042 family finger-like protein (RefSeq), at 3,224,908 to 3,225,654
_3057
Dshi_3058: Dshi_3058 - hypothetical protein (RefSeq), at 3,225,943 to 3,228,627
_3058
Dshi_3059: Dshi_3059 - diaminopimelate decarboxylase (RefSeq), at 3,228,631 to 3,229,926
_3059
Position (kb)
3225
3226
3227
3228
3229 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3225.746 kb on + strand at 3225.870 kb on - strand at 3226.090 kb on - strand at 3226.090 kb on - strand at 3226.154 kb on + strand at 3226.632 kb on + strand, within Dshi_3058 at 3226.640 kb on - strand, within Dshi_3058 at 3226.710 kb on - strand, within Dshi_3058 at 3226.829 kb on + strand, within Dshi_3058 at 3226.835 kb on - strand, within Dshi_3058 at 3226.836 kb on - strand, within Dshi_3058 at 3226.857 kb on - strand, within Dshi_3058 at 3226.918 kb on + strand, within Dshi_3058 at 3226.926 kb on - strand, within Dshi_3058 at 3226.961 kb on + strand, within Dshi_3058 at 3227.063 kb on + strand, within Dshi_3058 at 3227.071 kb on - strand, within Dshi_3058 at 3227.087 kb on + strand, within Dshi_3058 at 3227.095 kb on - strand, within Dshi_3058 at 3227.095 kb on - strand, within Dshi_3058 at 3227.232 kb on + strand, within Dshi_3058 at 3227.346 kb on + strand, within Dshi_3058 at 3227.357 kb on + strand, within Dshi_3058 at 3227.445 kb on - strand, within Dshi_3058 at 3227.600 kb on - strand, within Dshi_3058 at 3227.619 kb on + strand, within Dshi_3058 at 3227.685 kb on - strand, within Dshi_3058 at 3227.768 kb on - strand, within Dshi_3058 at 3227.943 kb on - strand, within Dshi_3058 at 3228.014 kb on - strand, within Dshi_3058 at 3228.128 kb on - strand, within Dshi_3058 at 3228.138 kb on - strand, within Dshi_3058 at 3228.219 kb on - strand, within Dshi_3058 at 3228.293 kb on - strand, within Dshi_3058 at 3228.312 kb on - strand, within Dshi_3058 at 3228.362 kb on - strand at 3228.557 kb on - strand at 3228.574 kb on + strand at 3228.611 kb on + strand at 3228.629 kb on + strand at 3228.629 kb on + strand at 3228.654 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,225,746 + -0.6 3,225,870 - -2.6 3,226,090 - +1.4 3,226,090 - -2.6 3,226,154 + +0.9 3,226,632 + Dshi_3058 0.26 +1.4 3,226,640 - Dshi_3058 0.26 -0.2 3,226,710 - Dshi_3058 0.29 -0.3 3,226,829 + Dshi_3058 0.33 +0.5 3,226,835 - Dshi_3058 0.33 -0.2 3,226,836 - Dshi_3058 0.33 +1.4 3,226,857 - Dshi_3058 0.34 -1.5 3,226,918 + Dshi_3058 0.36 +0.1 3,226,926 - Dshi_3058 0.37 -1.6 3,226,961 + Dshi_3058 0.38 +1.4 3,227,063 + Dshi_3058 0.42 -0.5 3,227,071 - Dshi_3058 0.42 +0.2 3,227,087 + Dshi_3058 0.43 -2.3 3,227,095 - Dshi_3058 0.43 +2.9 3,227,095 - Dshi_3058 0.43 -1.2 3,227,232 + Dshi_3058 0.48 -0.2 3,227,346 + Dshi_3058 0.52 +1.5 3,227,357 + Dshi_3058 0.53 -2.0 3,227,445 - Dshi_3058 0.56 +2.9 3,227,600 - Dshi_3058 0.62 -1.1 3,227,619 + Dshi_3058 0.62 +1.4 3,227,685 - Dshi_3058 0.65 -0.4 3,227,768 - Dshi_3058 0.68 +0.8 3,227,943 - Dshi_3058 0.74 +2.9 3,228,014 - Dshi_3058 0.77 +1.4 3,228,128 - Dshi_3058 0.81 -0.4 3,228,138 - Dshi_3058 0.82 +1.4 3,228,219 - Dshi_3058 0.85 +0.2 3,228,293 - Dshi_3058 0.88 -0.6 3,228,312 - Dshi_3058 0.88 -0.2 3,228,362 - -2.3 3,228,557 - -1.0 3,228,574 + +1.4 3,228,611 + +0.4 3,228,629 + +1.4 3,228,629 + -2.5 3,228,654 + +4.8
Or see this region's nucleotide sequence