Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2949 and Dshi_2950 are separated by 141 nucleotides Dshi_2950 and Dshi_2951 are separated by 213 nucleotides Dshi_2951 and Dshi_2952 are separated by 6 nucleotides Dshi_2952 and Dshi_2953 overlap by 4 nucleotides
Dshi_2949: Dshi_2949 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (RefSeq), at 3,109,029 to 3,111,326
_2949
Dshi_2950: Dshi_2950 - hypothetical protein (RefSeq), at 3,111,468 to 3,111,923
_2950
Dshi_2951: Dshi_2951 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 3,112,137 to 3,113,279
_2951
Dshi_2952: Dshi_2952 - pantoate--beta-alanine ligase (RefSeq), at 3,113,286 to 3,114,131
_2952
Dshi_2953: Dshi_2953 - ATP phosphoribosyltransferase (RefSeq), at 3,114,128 to 3,114,847
_2953
Position (kb)
3112
3113
3114 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3111.162 kb on - strand at 3111.425 kb on + strand at 3111.425 kb on + strand at 3111.554 kb on - strand, within Dshi_2950 at 3111.819 kb on - strand, within Dshi_2950 at 3111.843 kb on + strand, within Dshi_2950 at 3112.125 kb on + strand at 3112.133 kb on - strand at 3112.133 kb on - strand at 3112.220 kb on - strand at 3112.329 kb on - strand, within Dshi_2951 at 3112.360 kb on - strand, within Dshi_2951 at 3112.659 kb on + strand, within Dshi_2951 at 3112.665 kb on - strand, within Dshi_2951 at 3112.884 kb on - strand, within Dshi_2951 at 3112.897 kb on + strand, within Dshi_2951 at 3113.044 kb on - strand, within Dshi_2951 at 3113.062 kb on - strand, within Dshi_2951 at 3113.062 kb on - strand, within Dshi_2951 at 3113.118 kb on - strand, within Dshi_2951 at 3113.120 kb on + strand, within Dshi_2951 at 3113.264 kb on + strand at 3113.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 3,111,162 - +1.3 3,111,425 + -2.6 3,111,425 + -0.5 3,111,554 - Dshi_2950 0.19 -1.9 3,111,819 - Dshi_2950 0.77 +1.0 3,111,843 + Dshi_2950 0.82 +2.1 3,112,125 + +2.3 3,112,133 - +0.5 3,112,133 - +0.9 3,112,220 - -2.2 3,112,329 - Dshi_2951 0.17 -0.2 3,112,360 - Dshi_2951 0.20 -2.3 3,112,659 + Dshi_2951 0.46 -0.5 3,112,665 - Dshi_2951 0.46 -1.5 3,112,884 - Dshi_2951 0.65 +1.3 3,112,897 + Dshi_2951 0.66 +1.3 3,113,044 - Dshi_2951 0.79 +1.7 3,113,062 - Dshi_2951 0.81 -1.7 3,113,062 - Dshi_2951 0.81 +0.6 3,113,118 - Dshi_2951 0.86 -0.5 3,113,120 + Dshi_2951 0.86 -2.1 3,113,264 + +1.3 3,113,288 + -1.7
Or see this region's nucleotide sequence