Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2918

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2917 and Dshi_2918 are separated by 28 nucleotidesDshi_2918 and Dshi_2919 are separated by 169 nucleotides Dshi_2917: Dshi_2917 - amidohydrolase (RefSeq), at 3,075,327 to 3,076,484 _2917 Dshi_2918: Dshi_2918 - GCN5-related N-acetyltransferase (RefSeq), at 3,076,513 to 3,077,004 _2918 Dshi_2919: Dshi_2919 - chaperonin GroEL (RefSeq), at 3,077,174 to 3,078,817 _2919 Position (kb) 3076 3077 3078Strain fitness (log2 ratio) -2 -1 0 1 2at 3076.188 kb on - strand, within Dshi_2917at 3076.283 kb on + strand, within Dshi_2917at 3076.729 kb on + strand, within Dshi_2918at 3076.866 kb on + strand, within Dshi_2918at 3076.874 kb on - strand, within Dshi_2918at 3077.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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3,076,188 - Dshi_2917 0.74 -0.2
3,076,283 + Dshi_2917 0.83 -2.7
3,076,729 + Dshi_2918 0.44 +1.3
3,076,866 + Dshi_2918 0.72 +2.6
3,076,874 - Dshi_2918 0.73 -0.3
3,077,045 - -2.7

Or see this region's nucleotide sequence