Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2842 and Dshi_2843 are separated by 23 nucleotides Dshi_2843 and Dshi_2844 overlap by 1 nucleotides
Dshi_2842: Dshi_2842 - basic membrane lipoprotein (RefSeq), at 2,999,169 to 3,000,158
_2842
Dshi_2843: Dshi_2843 - ABC transporter related (RefSeq), at 3,000,182 to 3,001,828
_2843
Dshi_2844: Dshi_2844 - inner-membrane translocator (RefSeq), at 3,001,828 to 3,002,946
_2844
Position (kb)
3000
3001
3002 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2999.242 kb on - strand at 2999.320 kb on - strand, within Dshi_2842 at 2999.493 kb on + strand, within Dshi_2842 at 2999.752 kb on - strand, within Dshi_2842 at 3000.089 kb on + strand at 3000.117 kb on + strand at 3000.209 kb on + strand at 3000.368 kb on + strand, within Dshi_2843 at 3000.390 kb on - strand, within Dshi_2843 at 3000.560 kb on + strand, within Dshi_2843 at 3000.579 kb on - strand, within Dshi_2843 at 3000.655 kb on + strand, within Dshi_2843 at 3000.871 kb on + strand, within Dshi_2843 at 3000.935 kb on - strand, within Dshi_2843 at 3000.965 kb on + strand, within Dshi_2843 at 3001.060 kb on + strand, within Dshi_2843 at 3001.060 kb on + strand, within Dshi_2843 at 3001.060 kb on + strand, within Dshi_2843 at 3001.089 kb on - strand, within Dshi_2843 at 3001.097 kb on + strand, within Dshi_2843 at 3001.354 kb on - strand, within Dshi_2843 at 3001.472 kb on + strand, within Dshi_2843 at 3001.608 kb on + strand, within Dshi_2843 at 3001.760 kb on - strand at 3001.775 kb on + strand at 3001.996 kb on + strand, within Dshi_2844 at 3002.162 kb on - strand, within Dshi_2844 at 3002.220 kb on + strand, within Dshi_2844 at 3002.244 kb on + strand, within Dshi_2844 at 3002.287 kb on + strand, within Dshi_2844 at 3002.328 kb on - strand, within Dshi_2844 at 3002.423 kb on - strand, within Dshi_2844 at 3002.430 kb on + strand, within Dshi_2844 at 3002.512 kb on + strand, within Dshi_2844 at 3002.664 kb on - strand, within Dshi_2844 at 3002.774 kb on + strand, within Dshi_2844
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,999,242 - +2.8 2,999,320 - Dshi_2842 0.15 -1.6 2,999,493 + Dshi_2842 0.33 -2.1 2,999,752 - Dshi_2842 0.59 -2.4 3,000,089 + -3.3 3,000,117 + +0.3 3,000,209 + -0.2 3,000,368 + Dshi_2843 0.11 -2.5 3,000,390 - Dshi_2843 0.13 +1.0 3,000,560 + Dshi_2843 0.23 +0.3 3,000,579 - Dshi_2843 0.24 -3.4 3,000,655 + Dshi_2843 0.29 -1.7 3,000,871 + Dshi_2843 0.42 -1.3 3,000,935 - Dshi_2843 0.46 +0.3 3,000,965 + Dshi_2843 0.48 -0.3 3,001,060 + Dshi_2843 0.53 -2.5 3,001,060 + Dshi_2843 0.53 -2.1 3,001,060 + Dshi_2843 0.53 +1.3 3,001,089 - Dshi_2843 0.55 +2.3 3,001,097 + Dshi_2843 0.56 -0.3 3,001,354 - Dshi_2843 0.71 -0.7 3,001,472 + Dshi_2843 0.78 +1.3 3,001,608 + Dshi_2843 0.87 +1.3 3,001,760 - -0.7 3,001,775 + +1.3 3,001,996 + Dshi_2844 0.15 -2.3 3,002,162 - Dshi_2844 0.30 -2.3 3,002,220 + Dshi_2844 0.35 -1.7 3,002,244 + Dshi_2844 0.37 -1.1 3,002,287 + Dshi_2844 0.41 +1.3 3,002,328 - Dshi_2844 0.45 +1.6 3,002,423 - Dshi_2844 0.53 -0.3 3,002,430 + Dshi_2844 0.54 +2.3 3,002,512 + Dshi_2844 0.61 -0.7 3,002,664 - Dshi_2844 0.75 -1.3 3,002,774 + Dshi_2844 0.85 +1.3
Or see this region's nucleotide sequence