Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2794

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2792 and Dshi_2793 overlap by 4 nucleotidesDshi_2793 and Dshi_2794 are separated by 22 nucleotidesDshi_2794 and Dshi_2795 are separated by 6 nucleotides Dshi_2792: Dshi_2792 - toxic anion resistance family protein (RefSeq), at 2,950,980 to 2,952,173 _2792 Dshi_2793: Dshi_2793 - lipoprotein, putative (RefSeq), at 2,952,170 to 2,953,117 _2793 Dshi_2794: Dshi_2794 - hypothetical protein (RefSeq), at 2,953,140 to 2,954,270 _2794 Dshi_2795: Dshi_2795 - hypothetical protein (RefSeq), at 2,954,277 to 2,955,392 _2795 Position (kb) 2953 2954 2955Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2952.147 kb on + strandat 2952.470 kb on - strand, within Dshi_2793at 2952.470 kb on - strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.581 kb on + strand, within Dshi_2793at 2952.589 kb on - strand, within Dshi_2793at 2952.589 kb on - strand, within Dshi_2793at 2952.667 kb on + strand, within Dshi_2793at 2952.817 kb on - strand, within Dshi_2793at 2952.833 kb on + strand, within Dshi_2793at 2952.918 kb on + strand, within Dshi_2793at 2952.947 kb on - strand, within Dshi_2793at 2952.960 kb on - strand, within Dshi_2793at 2953.089 kb on + strandat 2953.121 kb on - strandat 2953.260 kb on + strand, within Dshi_2794at 2953.365 kb on + strand, within Dshi_2794at 2953.377 kb on + strand, within Dshi_2794at 2953.445 kb on + strand, within Dshi_2794at 2953.517 kb on - strand, within Dshi_2794at 2953.542 kb on - strand, within Dshi_2794at 2953.605 kb on + strand, within Dshi_2794at 2953.712 kb on + strand, within Dshi_2794at 2953.826 kb on - strand, within Dshi_2794at 2953.842 kb on + strand, within Dshi_2794at 2954.048 kb on + strand, within Dshi_2794at 2954.233 kb on - strandat 2954.352 kb on + strandat 2954.444 kb on - strand, within Dshi_2795at 2954.456 kb on + strand, within Dshi_2795at 2954.510 kb on + strand, within Dshi_2795at 2954.511 kb on + strand, within Dshi_2795at 2954.636 kb on + strand, within Dshi_2795at 2954.655 kb on - strand, within Dshi_2795at 2954.678 kb on + strand, within Dshi_2795at 2954.702 kb on + strand, within Dshi_2795at 2954.710 kb on - strand, within Dshi_2795at 2954.715 kb on + strand, within Dshi_2795at 2954.774 kb on + strand, within Dshi_2795at 2954.775 kb on + strand, within Dshi_2795at 2954.831 kb on + strand, within Dshi_2795at 2954.868 kb on - strand, within Dshi_2795at 2954.906 kb on + strand, within Dshi_2795at 2955.033 kb on - strand, within Dshi_2795at 2955.052 kb on - strand, within Dshi_2795at 2955.052 kb on - strand, within Dshi_2795at 2955.056 kb on + strand, within Dshi_2795at 2955.072 kb on - strand, within Dshi_2795at 2955.196 kb on + strand, within Dshi_2795

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,952,147 + +1.3
2,952,470 - Dshi_2793 0.32 -0.7
2,952,470 - Dshi_2793 0.32 +0.5
2,952,581 + Dshi_2793 0.43 +1.4
2,952,581 + Dshi_2793 0.43 -2.4
2,952,581 + Dshi_2793 0.43 +2.3
2,952,589 - Dshi_2793 0.44 +0.5
2,952,589 - Dshi_2793 0.44 -0.3
2,952,667 + Dshi_2793 0.52 +1.3
2,952,817 - Dshi_2793 0.68 -1.3
2,952,833 + Dshi_2793 0.70 +0.1
2,952,918 + Dshi_2793 0.79 +0.3
2,952,947 - Dshi_2793 0.82 +1.3
2,952,960 - Dshi_2793 0.83 +2.8
2,953,089 + -3.3
2,953,121 - +2.1
2,953,260 + Dshi_2794 0.11 -1.5
2,953,365 + Dshi_2794 0.20 -0.3
2,953,377 + Dshi_2794 0.21 -3.3
2,953,445 + Dshi_2794 0.27 -1.1
2,953,517 - Dshi_2794 0.33 -0.3
2,953,542 - Dshi_2794 0.36 -2.3
2,953,605 + Dshi_2794 0.41 +0.3
2,953,712 + Dshi_2794 0.51 +3.8
2,953,826 - Dshi_2794 0.61 -0.3
2,953,842 + Dshi_2794 0.62 +1.3
2,954,048 + Dshi_2794 0.80 -1.7
2,954,233 - -0.7
2,954,352 + -0.7
2,954,444 - Dshi_2795 0.15 -1.1
2,954,456 + Dshi_2795 0.16 -0.3
2,954,510 + Dshi_2795 0.21 -0.6
2,954,511 + Dshi_2795 0.21 +1.3
2,954,636 + Dshi_2795 0.32 +0.9
2,954,655 - Dshi_2795 0.34 +0.3
2,954,678 + Dshi_2795 0.36 -1.5
2,954,702 + Dshi_2795 0.38 -1.2
2,954,710 - Dshi_2795 0.39 +1.3
2,954,715 + Dshi_2795 0.39 -1.2
2,954,774 + Dshi_2795 0.45 -0.2
2,954,775 + Dshi_2795 0.45 +0.5
2,954,831 + Dshi_2795 0.50 +0.8
2,954,868 - Dshi_2795 0.53 +1.3
2,954,906 + Dshi_2795 0.56 +3.6
2,955,033 - Dshi_2795 0.68 -3.4
2,955,052 - Dshi_2795 0.69 -0.3
2,955,052 - Dshi_2795 0.69 +1.3
2,955,056 + Dshi_2795 0.70 -0.7
2,955,072 - Dshi_2795 0.71 -1.7
2,955,196 + Dshi_2795 0.82 +1.3

Or see this region's nucleotide sequence