Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2781

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2779 and Dshi_2780 are separated by 69 nucleotidesDshi_2780 and Dshi_2781 are separated by 326 nucleotidesDshi_2781 and Dshi_2782 are separated by 132 nucleotides Dshi_2779: Dshi_2779 - protein of unknown function UPF0005 (RefSeq), at 2,940,622 to 2,941,344 _2779 Dshi_2780: Dshi_2780 - hypothetical protein (RefSeq), at 2,941,414 to 2,941,887 _2780 Dshi_2781: Dshi_2781 - ribosomal protein L33 (RefSeq), at 2,942,214 to 2,942,381 _2781 Dshi_2782: Dshi_2782 - PAS fold-4 domain protein (RefSeq), at 2,942,514 to 2,943,002 _2782 Position (kb) 2942 2943Strain fitness (log2 ratio) -1 0 1 2at 2941.453 kb on + strandat 2941.485 kb on - strand, within Dshi_2780at 2941.871 kb on + strandat 2941.920 kb on - strandat 2941.956 kb on + strandat 2942.753 kb on + strand, within Dshi_2782

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,941,453 + -0.3
2,941,485 - Dshi_2780 0.15 -0.9
2,941,871 + +1.3
2,941,920 - +2.3
2,941,956 + +1.3
2,942,753 + Dshi_2782 0.49 +2.4

Or see this region's nucleotide sequence