Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2774

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2773 and Dshi_2774 overlap by 4 nucleotidesDshi_2774 and Dshi_2775 are separated by 58 nucleotidesDshi_2775 and Dshi_2776 are separated by 352 nucleotides Dshi_2773: Dshi_2773 - amidohydrolase (RefSeq), at 2,935,167 to 2,936,507 _2773 Dshi_2774: Dshi_2774 - histidinol-phosphate phosphatase, putative (RefSeq), at 2,936,504 to 2,937,325 _2774 Dshi_2775: Dshi_2775 - transcriptional regulator, XRE family (RefSeq), at 2,937,384 to 2,937,755 _2775 Dshi_2776: Dshi_2776 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 2,938,108 to 2,939,067 _2776 Position (kb) 2936 2937 2938Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2935.648 kb on - strand, within Dshi_2773at 2935.737 kb on + strand, within Dshi_2773at 2935.740 kb on - strand, within Dshi_2773at 2935.740 kb on - strand, within Dshi_2773at 2935.745 kb on - strand, within Dshi_2773at 2935.856 kb on - strand, within Dshi_2773at 2935.882 kb on - strand, within Dshi_2773at 2935.889 kb on + strand, within Dshi_2773at 2935.910 kb on + strand, within Dshi_2773at 2935.917 kb on - strand, within Dshi_2773at 2935.917 kb on - strand, within Dshi_2773at 2936.123 kb on + strand, within Dshi_2773at 2936.220 kb on - strand, within Dshi_2773at 2936.238 kb on - strand, within Dshi_2773at 2936.251 kb on - strand, within Dshi_2773at 2936.295 kb on - strand, within Dshi_2773at 2936.320 kb on + strand, within Dshi_2773at 2936.328 kb on - strand, within Dshi_2773at 2936.387 kb on + strandat 2936.390 kb on - strandat 2936.477 kb on - strandat 2937.328 kb on + strandat 2937.381 kb on + strandat 2937.538 kb on - strand, within Dshi_2775at 2937.572 kb on + strand, within Dshi_2775at 2937.572 kb on + strand, within Dshi_2775at 2937.582 kb on - strand, within Dshi_2775at 2937.628 kb on + strand, within Dshi_2775at 2937.688 kb on + strand, within Dshi_2775at 2937.731 kb on - strandat 2937.807 kb on + strandat 2937.898 kb on - strandat 2938.079 kb on - strandat 2938.148 kb on + strandat 2938.186 kb on + strandat 2938.191 kb on - strandat 2938.247 kb on - strand, within Dshi_2776at 2938.254 kb on - strand, within Dshi_2776at 2938.280 kb on + strand, within Dshi_2776at 2938.312 kb on - strand, within Dshi_2776

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
2,935,648 - Dshi_2773 0.36 +1.3
2,935,737 + Dshi_2773 0.43 +2.5
2,935,740 - Dshi_2773 0.43 -1.8
2,935,740 - Dshi_2773 0.43 +3.3
2,935,745 - Dshi_2773 0.43 +0.2
2,935,856 - Dshi_2773 0.51 -0.1
2,935,882 - Dshi_2773 0.53 +2.9
2,935,889 + Dshi_2773 0.54 +1.3
2,935,910 + Dshi_2773 0.55 -1.5
2,935,917 - Dshi_2773 0.56 -2.1
2,935,917 - Dshi_2773 0.56 +1.3
2,936,123 + Dshi_2773 0.71 +0.5
2,936,220 - Dshi_2773 0.79 -0.3
2,936,238 - Dshi_2773 0.80 +0.0
2,936,251 - Dshi_2773 0.81 -2.5
2,936,295 - Dshi_2773 0.84 -0.3
2,936,320 + Dshi_2773 0.86 +1.3
2,936,328 - Dshi_2773 0.87 -0.3
2,936,387 + +3.0
2,936,390 - +1.2
2,936,477 - -0.1
2,937,328 + +1.3
2,937,381 + +0.9
2,937,538 - Dshi_2775 0.41 +1.3
2,937,572 + Dshi_2775 0.51 +1.5
2,937,572 + Dshi_2775 0.51 +0.3
2,937,582 - Dshi_2775 0.53 +1.3
2,937,628 + Dshi_2775 0.66 +1.3
2,937,688 + Dshi_2775 0.82 +1.3
2,937,731 - +1.0
2,937,807 + +1.3
2,937,898 - +0.2
2,938,079 - +1.3
2,938,148 + +1.3
2,938,186 + +2.3
2,938,191 - +0.2
2,938,247 - Dshi_2776 0.14 -2.0
2,938,254 - Dshi_2776 0.15 -0.9
2,938,280 + Dshi_2776 0.18 -0.5
2,938,312 - Dshi_2776 0.21 +0.3

Or see this region's nucleotide sequence