Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2773 and Dshi_2774 overlap by 4 nucleotides Dshi_2774 and Dshi_2775 are separated by 58 nucleotides Dshi_2775 and Dshi_2776 are separated by 352 nucleotides
Dshi_2773: Dshi_2773 - amidohydrolase (RefSeq), at 2,935,167 to 2,936,507
_2773
Dshi_2774: Dshi_2774 - histidinol-phosphate phosphatase, putative (RefSeq), at 2,936,504 to 2,937,325
_2774
Dshi_2775: Dshi_2775 - transcriptional regulator, XRE family (RefSeq), at 2,937,384 to 2,937,755
_2775
Dshi_2776: Dshi_2776 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 2,938,108 to 2,939,067
_2776
Position (kb)
2936
2937
2938 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2935.648 kb on - strand, within Dshi_2773 at 2935.737 kb on + strand, within Dshi_2773 at 2935.740 kb on - strand, within Dshi_2773 at 2935.740 kb on - strand, within Dshi_2773 at 2935.745 kb on - strand, within Dshi_2773 at 2935.856 kb on - strand, within Dshi_2773 at 2935.882 kb on - strand, within Dshi_2773 at 2935.889 kb on + strand, within Dshi_2773 at 2935.910 kb on + strand, within Dshi_2773 at 2935.917 kb on - strand, within Dshi_2773 at 2935.917 kb on - strand, within Dshi_2773 at 2936.123 kb on + strand, within Dshi_2773 at 2936.220 kb on - strand, within Dshi_2773 at 2936.238 kb on - strand, within Dshi_2773 at 2936.251 kb on - strand, within Dshi_2773 at 2936.295 kb on - strand, within Dshi_2773 at 2936.320 kb on + strand, within Dshi_2773 at 2936.328 kb on - strand, within Dshi_2773 at 2936.387 kb on + strand at 2936.390 kb on - strand at 2936.477 kb on - strand at 2937.328 kb on + strand at 2937.381 kb on + strand at 2937.538 kb on - strand, within Dshi_2775 at 2937.572 kb on + strand, within Dshi_2775 at 2937.572 kb on + strand, within Dshi_2775 at 2937.582 kb on - strand, within Dshi_2775 at 2937.628 kb on + strand, within Dshi_2775 at 2937.688 kb on + strand, within Dshi_2775 at 2937.731 kb on - strand at 2937.807 kb on + strand at 2937.898 kb on - strand at 2938.079 kb on - strand at 2938.148 kb on + strand at 2938.186 kb on + strand at 2938.191 kb on - strand at 2938.247 kb on - strand, within Dshi_2776 at 2938.254 kb on - strand, within Dshi_2776 at 2938.280 kb on + strand, within Dshi_2776 at 2938.312 kb on - strand, within Dshi_2776
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,935,648 - Dshi_2773 0.36 +1.3 2,935,737 + Dshi_2773 0.43 +2.5 2,935,740 - Dshi_2773 0.43 -1.8 2,935,740 - Dshi_2773 0.43 +3.3 2,935,745 - Dshi_2773 0.43 +0.2 2,935,856 - Dshi_2773 0.51 -0.1 2,935,882 - Dshi_2773 0.53 +2.9 2,935,889 + Dshi_2773 0.54 +1.3 2,935,910 + Dshi_2773 0.55 -1.5 2,935,917 - Dshi_2773 0.56 -2.1 2,935,917 - Dshi_2773 0.56 +1.3 2,936,123 + Dshi_2773 0.71 +0.5 2,936,220 - Dshi_2773 0.79 -0.3 2,936,238 - Dshi_2773 0.80 +0.0 2,936,251 - Dshi_2773 0.81 -2.5 2,936,295 - Dshi_2773 0.84 -0.3 2,936,320 + Dshi_2773 0.86 +1.3 2,936,328 - Dshi_2773 0.87 -0.3 2,936,387 + +3.0 2,936,390 - +1.2 2,936,477 - -0.1 2,937,328 + +1.3 2,937,381 + +0.9 2,937,538 - Dshi_2775 0.41 +1.3 2,937,572 + Dshi_2775 0.51 +1.5 2,937,572 + Dshi_2775 0.51 +0.3 2,937,582 - Dshi_2775 0.53 +1.3 2,937,628 + Dshi_2775 0.66 +1.3 2,937,688 + Dshi_2775 0.82 +1.3 2,937,731 - +1.0 2,937,807 + +1.3 2,937,898 - +0.2 2,938,079 - +1.3 2,938,148 + +1.3 2,938,186 + +2.3 2,938,191 - +0.2 2,938,247 - Dshi_2776 0.14 -2.0 2,938,254 - Dshi_2776 0.15 -0.9 2,938,280 + Dshi_2776 0.18 -0.5 2,938,312 - Dshi_2776 0.21 +0.3
Or see this region's nucleotide sequence