Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2707
Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Chloramphenicol 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,866,681 | + | Dshi_2706 | 0.23 | -1.1 | |
2,866,686 | + | Dshi_2706 | 0.23 | +0.3 | |
2,866,717 | - | Dshi_2706 | 0.26 | -2.1 | |
2,866,799 | + | Dshi_2706 | 0.32 | +0.3 | |
2,866,823 | - | Dshi_2706 | 0.34 | -0.7 | |
2,866,888 | - | Dshi_2706 | 0.40 | -0.6 | |
2,866,989 | - | Dshi_2706 | 0.48 | -0.3 | |
2,867,032 | + | Dshi_2706 | 0.52 | -1.3 | |
2,867,032 | + | Dshi_2706 | 0.52 | +1.3 | |
2,867,042 | + | Dshi_2706 | 0.52 | -0.7 | |
2,867,050 | - | Dshi_2706 | 0.53 | -1.6 | |
2,867,083 | - | Dshi_2706 | 0.56 | +1.3 | |
2,867,185 | - | Dshi_2706 | 0.64 | -0.2 | |
2,867,255 | - | Dshi_2706 | 0.70 | +0.8 | |
2,867,338 | + | Dshi_2706 | 0.77 | -1.1 | |
2,867,475 | + | Dshi_2706 | 0.88 | -1.3 | |
2,867,557 | + | -3.0 | |||
2,867,570 | - | +1.3 | |||
2,869,426 | + | -0.1 | |||
2,869,426 | + | +0.3 | |||
2,869,497 | + | -0.4 | |||
2,869,571 | + | +1.7 | |||
2,869,833 | - | Dshi_2708 | 0.21 | +0.4 | |
2,869,867 | - | Dshi_2708 | 0.23 | -2.2 | |
2,869,923 | + | Dshi_2708 | 0.26 | -1.2 | |
2,870,307 | + | Dshi_2708 | 0.51 | +0.5 | |
2,870,345 | - | Dshi_2708 | 0.53 | -1.4 | |
2,870,350 | - | Dshi_2708 | 0.53 | +1.0 |
Or see this region's nucleotide sequence