Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2644

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2643 and Dshi_2644 overlap by 1 nucleotidesDshi_2644 and Dshi_2645 are separated by 3 nucleotidesDshi_2645 and Dshi_2646 are separated by 31 nucleotides Dshi_2643: Dshi_2643 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 2,800,367 to 2,801,317 _2643 Dshi_2644: Dshi_2644 - export-related chaperone CsaA (RefSeq), at 2,801,317 to 2,801,655 _2644 Dshi_2645: Dshi_2645 - pyrroline-5-carboxylate reductase (RefSeq), at 2,801,659 to 2,802,480 _2645 Dshi_2646: Dshi_2646 - Protein of unknown function DUF1790 (RefSeq), at 2,802,512 to 2,803,042 _2646 Position (kb) 2801 2802Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2800.374 kb on + strandat 2800.430 kb on + strandat 2800.497 kb on - strand, within Dshi_2643at 2800.725 kb on + strand, within Dshi_2643at 2800.787 kb on - strand, within Dshi_2643at 2800.925 kb on + strand, within Dshi_2643at 2801.080 kb on + strand, within Dshi_2643at 2801.089 kb on - strand, within Dshi_2643at 2801.128 kb on + strand, within Dshi_2643at 2801.144 kb on - strand, within Dshi_2643at 2801.182 kb on + strand, within Dshi_2643at 2801.220 kb on + strand, within Dshi_2643at 2801.281 kb on - strandat 2801.375 kb on - strand, within Dshi_2644at 2801.453 kb on + strand, within Dshi_2644at 2801.453 kb on + strand, within Dshi_2644at 2801.486 kb on - strand, within Dshi_2644at 2801.598 kb on - strand, within Dshi_2644at 2802.529 kb on + strandat 2802.597 kb on + strand, within Dshi_2646at 2802.597 kb on + strand, within Dshi_2646at 2802.605 kb on - strand, within Dshi_2646at 2802.605 kb on - strand, within Dshi_2646

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,800,374 + -3.0
2,800,430 + -1.7
2,800,497 - Dshi_2643 0.14 +1.2
2,800,725 + Dshi_2643 0.38 +0.8
2,800,787 - Dshi_2643 0.44 -1.1
2,800,925 + Dshi_2643 0.59 +2.4
2,801,080 + Dshi_2643 0.75 +3.7
2,801,089 - Dshi_2643 0.76 -2.3
2,801,128 + Dshi_2643 0.80 -0.8
2,801,144 - Dshi_2643 0.82 -1.8
2,801,182 + Dshi_2643 0.86 -1.2
2,801,220 + Dshi_2643 0.90 +0.6
2,801,281 - +0.4
2,801,375 - Dshi_2644 0.17 +1.2
2,801,453 + Dshi_2644 0.40 -1.2
2,801,453 + Dshi_2644 0.40 +1.2
2,801,486 - Dshi_2644 0.50 +1.2
2,801,598 - Dshi_2644 0.83 +1.0
2,802,529 + -1.2
2,802,597 + Dshi_2646 0.16 -2.8
2,802,597 + Dshi_2646 0.16 +1.2
2,802,605 - Dshi_2646 0.18 +1.2
2,802,605 - Dshi_2646 0.18 +0.2

Or see this region's nucleotide sequence