Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2572 and Dshi_2573 are separated by 106 nucleotides Dshi_2573 and Dshi_2574 are separated by 270 nucleotides Dshi_2574 and Dshi_2575 are separated by 88 nucleotides Dshi_2575 and Dshi_2576 overlap by 4 nucleotides
Dshi_2572: Dshi_2572 - hypothetical protein (RefSeq), at 2,739,576 to 2,739,908
_2572
Dshi_2573: Dshi_2573 - hypothetical protein (RefSeq), at 2,740,015 to 2,740,470
_2573
Dshi_2574: Dshi_2574 - CoA-binding domain protein (RefSeq), at 2,740,741 to 2,741,226
_2574
Dshi_2575: Dshi_2575 - phosphoribosyl-ATP pyrophosphohydrolase (RefSeq), at 2,741,315 to 2,741,623
_2575
Dshi_2576: Dshi_2576 - imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq), at 2,741,620 to 2,742,381
_2576
Position (kb)
2740
2741
2742 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2739.761 kb on - strand, within Dshi_2572 at 2739.775 kb on + strand, within Dshi_2572 at 2739.783 kb on - strand, within Dshi_2572 at 2739.783 kb on - strand, within Dshi_2572 at 2739.798 kb on + strand, within Dshi_2572 at 2739.885 kb on - strand at 2740.040 kb on - strand at 2740.078 kb on + strand, within Dshi_2573 at 2740.087 kb on - strand, within Dshi_2573 at 2740.136 kb on + strand, within Dshi_2573 at 2740.162 kb on - strand, within Dshi_2573 at 2740.182 kb on - strand, within Dshi_2573 at 2740.247 kb on - strand, within Dshi_2573 at 2740.264 kb on + strand, within Dshi_2573 at 2740.264 kb on + strand, within Dshi_2573 at 2740.277 kb on - strand, within Dshi_2573 at 2740.299 kb on + strand, within Dshi_2573 at 2740.325 kb on - strand, within Dshi_2573 at 2740.425 kb on - strand at 2740.459 kb on + strand at 2740.459 kb on + strand at 2740.467 kb on - strand at 2740.478 kb on + strand at 2740.478 kb on + strand at 2740.486 kb on - strand at 2740.502 kb on + strand at 2740.554 kb on - strand at 2740.607 kb on + strand at 2740.683 kb on - strand at 2740.815 kb on - strand, within Dshi_2574 at 2741.201 kb on - strand at 2741.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,739,761 - Dshi_2572 0.56 +1.1 2,739,775 + Dshi_2572 0.60 -4.2 2,739,783 - Dshi_2572 0.62 -2.4 2,739,783 - Dshi_2572 0.62 +1.1 2,739,798 + Dshi_2572 0.67 -3.9 2,739,885 - -3.3 2,740,040 - +1.4 2,740,078 + Dshi_2573 0.14 -1.7 2,740,087 - Dshi_2573 0.16 -2.5 2,740,136 + Dshi_2573 0.27 -1.2 2,740,162 - Dshi_2573 0.32 +0.1 2,740,182 - Dshi_2573 0.37 -1.5 2,740,247 - Dshi_2573 0.51 -3.1 2,740,264 + Dshi_2573 0.55 +0.3 2,740,264 + Dshi_2573 0.55 -1.3 2,740,277 - Dshi_2573 0.57 -2.2 2,740,299 + Dshi_2573 0.62 -0.9 2,740,325 - Dshi_2573 0.68 +4.4 2,740,425 - +1.7 2,740,459 + -2.7 2,740,459 + +1.1 2,740,467 - -2.1 2,740,478 + +1.1 2,740,478 + +1.1 2,740,486 - +0.3 2,740,502 + -1.8 2,740,554 - +0.5 2,740,607 + -1.5 2,740,683 - -2.9 2,740,815 - Dshi_2574 0.15 -0.2 2,741,201 - -1.7 2,741,213 + -2.2
Or see this region's nucleotide sequence