Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2522

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2520 and Dshi_2521 are separated by 101 nucleotidesDshi_2521 and Dshi_2522 are separated by 84 nucleotidesDshi_2522 and Dshi_2523 are separated by 71 nucleotides Dshi_2520: Dshi_2520 - hypothetical protein (RefSeq), at 2,682,578 to 2,682,790 _2520 Dshi_2521: Dshi_2521 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,682,892 to 2,683,569 _2521 Dshi_2522: Dshi_2522 - Peroxiredoxin (RefSeq), at 2,683,654 to 2,684,346 _2522 Dshi_2523: Dshi_2523 - transcriptional regulator, LysR family (RefSeq), at 2,684,418 to 2,685,335 _2523 Position (kb) 2683 2684 2685Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2682.659 kb on - strand, within Dshi_2520at 2682.676 kb on - strand, within Dshi_2520at 2682.686 kb on - strand, within Dshi_2520at 2682.719 kb on - strand, within Dshi_2520at 2682.723 kb on + strand, within Dshi_2520at 2682.779 kb on - strandat 2682.855 kb on - strandat 2682.862 kb on + strandat 2682.884 kb on + strandat 2682.962 kb on + strand, within Dshi_2521at 2683.039 kb on - strand, within Dshi_2521at 2683.039 kb on - strand, within Dshi_2521at 2683.039 kb on - strand, within Dshi_2521at 2683.063 kb on - strand, within Dshi_2521at 2683.067 kb on - strand, within Dshi_2521at 2683.081 kb on - strand, within Dshi_2521at 2683.119 kb on + strand, within Dshi_2521at 2683.121 kb on + strand, within Dshi_2521at 2683.153 kb on + strand, within Dshi_2521at 2683.153 kb on + strand, within Dshi_2521at 2683.282 kb on + strand, within Dshi_2521at 2683.322 kb on - strand, within Dshi_2521at 2683.344 kb on - strand, within Dshi_2521at 2683.360 kb on + strand, within Dshi_2521at 2683.363 kb on + strand, within Dshi_2521at 2683.368 kb on - strand, within Dshi_2521at 2683.376 kb on - strand, within Dshi_2521at 2683.398 kb on + strand, within Dshi_2521at 2683.459 kb on - strand, within Dshi_2521at 2683.546 kb on - strandat 2683.655 kb on - strandat 2683.730 kb on - strand, within Dshi_2522at 2683.836 kb on + strand, within Dshi_2522at 2683.922 kb on + strand, within Dshi_2522at 2683.922 kb on + strand, within Dshi_2522at 2683.930 kb on - strand, within Dshi_2522at 2683.930 kb on - strand, within Dshi_2522at 2683.968 kb on - strand, within Dshi_2522at 2684.093 kb on - strand, within Dshi_2522at 2684.109 kb on + strand, within Dshi_2522at 2684.151 kb on + strand, within Dshi_2522at 2684.213 kb on + strand, within Dshi_2522at 2684.260 kb on + strand, within Dshi_2522at 2684.274 kb on + strand, within Dshi_2522at 2684.284 kb on + strandat 2684.305 kb on - strandat 2684.433 kb on - strandat 2684.464 kb on - strandat 2684.502 kb on + strandat 2684.524 kb on - strand, within Dshi_2523at 2684.532 kb on - strand, within Dshi_2523at 2684.561 kb on + strand, within Dshi_2523at 2684.620 kb on - strand, within Dshi_2523at 2684.632 kb on + strand, within Dshi_2523at 2684.689 kb on + strand, within Dshi_2523at 2684.694 kb on - strand, within Dshi_2523at 2684.744 kb on + strand, within Dshi_2523at 2684.771 kb on + strand, within Dshi_2523at 2684.824 kb on - strand, within Dshi_2523at 2684.983 kb on - strand, within Dshi_2523at 2685.013 kb on + strand, within Dshi_2523at 2685.029 kb on - strand, within Dshi_2523at 2685.069 kb on + strand, within Dshi_2523at 2685.184 kb on + strand, within Dshi_2523at 2685.194 kb on + strand, within Dshi_2523at 2685.197 kb on - strand, within Dshi_2523at 2685.199 kb on + strand, within Dshi_2523at 2685.199 kb on + strand, within Dshi_2523at 2685.212 kb on - strand, within Dshi_2523at 2685.223 kb on + strand, within Dshi_2523at 2685.223 kb on + strand, within Dshi_2523at 2685.223 kb on + strand, within Dshi_2523at 2685.223 kb on + strand, within Dshi_2523at 2685.223 kb on + strand, within Dshi_2523at 2685.223 kb on + strand, within Dshi_2523at 2685.224 kb on + strand, within Dshi_2523at 2685.231 kb on - strand, within Dshi_2523at 2685.231 kb on - strand, within Dshi_2523at 2685.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,682,659 - Dshi_2520 0.38 +1.2
2,682,676 - Dshi_2520 0.46 -1.5
2,682,686 - Dshi_2520 0.51 -0.7
2,682,719 - Dshi_2520 0.66 -0.9
2,682,723 + Dshi_2520 0.68 +1.3
2,682,779 - +0.3
2,682,855 - -0.4
2,682,862 + +0.9
2,682,884 + -1.1
2,682,962 + Dshi_2521 0.10 -0.3
2,683,039 - Dshi_2521 0.22 +0.6
2,683,039 - Dshi_2521 0.22 -2.9
2,683,039 - Dshi_2521 0.22 +1.1
2,683,063 - Dshi_2521 0.25 -0.1
2,683,067 - Dshi_2521 0.26 +0.0
2,683,081 - Dshi_2521 0.28 -0.3
2,683,119 + Dshi_2521 0.33 +0.2
2,683,121 + Dshi_2521 0.34 +0.4
2,683,153 + Dshi_2521 0.38 +1.1
2,683,153 + Dshi_2521 0.38 -0.2
2,683,282 + Dshi_2521 0.58 -0.5
2,683,322 - Dshi_2521 0.63 -0.1
2,683,344 - Dshi_2521 0.67 -1.5
2,683,360 + Dshi_2521 0.69 +0.2
2,683,363 + Dshi_2521 0.69 +0.4
2,683,368 - Dshi_2521 0.70 -1.8
2,683,376 - Dshi_2521 0.71 -0.1
2,683,398 + Dshi_2521 0.75 +0.5
2,683,459 - Dshi_2521 0.84 +4.3
2,683,546 - +1.3
2,683,655 - -1.3
2,683,730 - Dshi_2522 0.11 -1.2
2,683,836 + Dshi_2522 0.26 +0.9
2,683,922 + Dshi_2522 0.39 +1.3
2,683,922 + Dshi_2522 0.39 +1.4
2,683,930 - Dshi_2522 0.40 -3.2
2,683,930 - Dshi_2522 0.40 +0.8
2,683,968 - Dshi_2522 0.45 +0.2
2,684,093 - Dshi_2522 0.63 +0.6
2,684,109 + Dshi_2522 0.66 -1.0
2,684,151 + Dshi_2522 0.72 -0.6
2,684,213 + Dshi_2522 0.81 +0.2
2,684,260 + Dshi_2522 0.87 -1.7
2,684,274 + Dshi_2522 0.89 -0.1
2,684,284 + -0.1
2,684,305 - +3.1
2,684,433 - +0.3
2,684,464 - -1.7
2,684,502 + -1.2
2,684,524 - Dshi_2523 0.12 -0.6
2,684,532 - Dshi_2523 0.12 +1.2
2,684,561 + Dshi_2523 0.16 +0.4
2,684,620 - Dshi_2523 0.22 -2.6
2,684,632 + Dshi_2523 0.23 -0.2
2,684,689 + Dshi_2523 0.30 +0.6
2,684,694 - Dshi_2523 0.30 -2.7
2,684,744 + Dshi_2523 0.36 -3.0
2,684,771 + Dshi_2523 0.38 +0.7
2,684,824 - Dshi_2523 0.44 -0.2
2,684,983 - Dshi_2523 0.62 -1.3
2,685,013 + Dshi_2523 0.65 -3.1
2,685,029 - Dshi_2523 0.67 -0.4
2,685,069 + Dshi_2523 0.71 +2.1
2,685,184 + Dshi_2523 0.83 +0.1
2,685,194 + Dshi_2523 0.85 -0.4
2,685,197 - Dshi_2523 0.85 +1.5
2,685,199 + Dshi_2523 0.85 +1.8
2,685,199 + Dshi_2523 0.85 +0.4
2,685,212 - Dshi_2523 0.86 +0.1
2,685,223 + Dshi_2523 0.88 +2.7
2,685,223 + Dshi_2523 0.88 -0.2
2,685,223 + Dshi_2523 0.88 +1.1
2,685,223 + Dshi_2523 0.88 +0.2
2,685,223 + Dshi_2523 0.88 -2.5
2,685,223 + Dshi_2523 0.88 +3.0
2,685,224 + Dshi_2523 0.88 -0.3
2,685,231 - Dshi_2523 0.89 +2.0
2,685,231 - Dshi_2523 0.89 +0.8
2,685,295 - -0.9

Or see this region's nucleotide sequence