Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2413

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2412 and Dshi_2413 are separated by 162 nucleotidesDshi_2413 and Dshi_2414 are separated by 88 nucleotides Dshi_2412: Dshi_2412 - Chloride channel core (RefSeq), at 2,549,412 to 2,551,100 _2412 Dshi_2413: Dshi_2413 - DNA repair protein RecN (RefSeq), at 2,551,263 to 2,552,924 _2413 Dshi_2414: Dshi_2414 - competence lipoprotein ComL, putative (RefSeq), at 2,553,013 to 2,553,852 _2414 Position (kb) 2551 2552 2553Strain fitness (log2 ratio) -1 0 1 2 3at 2550.453 kb on + strand, within Dshi_2412at 2551.394 kb on - strandat 2551.874 kb on + strand, within Dshi_2413at 2551.880 kb on + strand, within Dshi_2413at 2551.880 kb on + strand, within Dshi_2413at 2551.918 kb on + strand, within Dshi_2413at 2552.406 kb on - strand, within Dshi_2413at 2553.050 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,550,453 + Dshi_2412 0.62 +0.1
2,551,394 - +0.4
2,551,874 + Dshi_2413 0.37 -1.7
2,551,880 + Dshi_2413 0.37 +0.9
2,551,880 + Dshi_2413 0.37 +0.9
2,551,918 + Dshi_2413 0.39 +3.4
2,552,406 - Dshi_2413 0.69 +0.1
2,553,050 + -1.3

Or see this region's nucleotide sequence