Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2262

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2261 and Dshi_2262 are separated by 121 nucleotidesDshi_2262 and Dshi_2263 are separated by 55 nucleotidesDshi_2263 and Dshi_2264 overlap by 8 nucleotides Dshi_2261: Dshi_2261 - RNA polymerase, sigma 70 subunit, RpoD family (RefSeq), at 2,381,601 to 2,383,595 _2261 Dshi_2262: Dshi_2262 - DNA primase (RefSeq), at 2,383,717 to 2,385,669 _2262 Dshi_2263: Dshi_2263 - sarcosine oxidase, gamma subunit, putative (RefSeq), at 2,385,725 to 2,386,303 _2263 Dshi_2264: Dshi_2264 - sarcosine oxidase, alpha subunit family (RefSeq), at 2,386,296 to 2,389,238 _2264 Position (kb) 2383 2384 2385 2386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2383.689 kb on - strandat 2383.724 kb on - strandat 2385.779 kb on - strandat 2385.836 kb on + strand, within Dshi_2263at 2385.847 kb on - strand, within Dshi_2263at 2385.886 kb on + strand, within Dshi_2263at 2385.900 kb on + strand, within Dshi_2263at 2385.900 kb on + strand, within Dshi_2263at 2385.908 kb on - strand, within Dshi_2263at 2385.926 kb on - strand, within Dshi_2263at 2385.931 kb on + strand, within Dshi_2263at 2385.939 kb on + strand, within Dshi_2263at 2386.037 kb on - strand, within Dshi_2263at 2386.084 kb on - strand, within Dshi_2263at 2386.086 kb on + strand, within Dshi_2263at 2386.094 kb on - strand, within Dshi_2263at 2386.094 kb on - strand, within Dshi_2263at 2386.170 kb on - strand, within Dshi_2263at 2386.191 kb on + strand, within Dshi_2263at 2386.199 kb on - strand, within Dshi_2263at 2386.199 kb on - strand, within Dshi_2263at 2386.399 kb on - strandat 2386.407 kb on + strandat 2386.485 kb on - strandat 2386.490 kb on - strandat 2386.513 kb on - strandat 2386.526 kb on + strandat 2386.597 kb on - strand, within Dshi_2264at 2386.599 kb on + strand, within Dshi_2264

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,383,689 - -0.9
2,383,724 - +0.9
2,385,779 - -0.4
2,385,836 + Dshi_2263 0.19 -1.0
2,385,847 - Dshi_2263 0.21 +1.6
2,385,886 + Dshi_2263 0.28 +1.2
2,385,900 + Dshi_2263 0.30 -1.6
2,385,900 + Dshi_2263 0.30 +0.9
2,385,908 - Dshi_2263 0.32 -1.1
2,385,926 - Dshi_2263 0.35 +0.0
2,385,931 + Dshi_2263 0.36 +0.3
2,385,939 + Dshi_2263 0.37 -2.8
2,386,037 - Dshi_2263 0.54 -0.4
2,386,084 - Dshi_2263 0.62 +1.0
2,386,086 + Dshi_2263 0.62 -1.3
2,386,094 - Dshi_2263 0.64 -1.3
2,386,094 - Dshi_2263 0.64 +2.1
2,386,170 - Dshi_2263 0.77 +3.4
2,386,191 + Dshi_2263 0.80 +1.2
2,386,199 - Dshi_2263 0.82 +1.1
2,386,199 - Dshi_2263 0.82 +2.4
2,386,399 - +0.6
2,386,407 + -1.2
2,386,485 - -2.7
2,386,490 - -1.1
2,386,513 - -0.3
2,386,526 + +1.1
2,386,597 - Dshi_2264 0.10 +1.0
2,386,599 + Dshi_2264 0.10 -3.2

Or see this region's nucleotide sequence