Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2062
Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Chloramphenicol 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,182,704 | - | -0.2 | |||
2,182,977 | + | +4.1 | |||
2,182,977 | + | +2.4 | |||
2,182,985 | - | +0.1 | |||
2,183,000 | - | +1.3 | |||
2,183,015 | - | -1.6 | |||
2,183,026 | - | +1.6 | |||
2,183,264 | - | Dshi_2062 | 0.20 | -0.1 | |
2,183,546 | - | Dshi_2062 | 0.33 | -0.8 | |
2,183,791 | + | Dshi_2062 | 0.44 | +0.3 | |
2,183,992 | + | Dshi_2062 | 0.53 | +2.6 | |
2,184,086 | - | Dshi_2062 | 0.57 | +4.5 | |
2,184,215 | - | Dshi_2062 | 0.63 | -0.8 | |
2,184,281 | - | Dshi_2062 | 0.66 | -0.5 | |
2,184,505 | - | Dshi_2062 | 0.75 | -0.7 | |
2,184,618 | - | Dshi_2062 | 0.81 | -2.1 | |
2,185,107 | - | +0.6 | |||
2,185,173 | - | Dshi_2063 | 0.16 | +0.4 | |
2,185,173 | - | Dshi_2063 | 0.16 | +0.0 | |
2,185,192 | + | Dshi_2063 | 0.19 | +0.6 | |
2,185,200 | - | Dshi_2063 | 0.20 | +1.4 | |
2,185,292 | + | Dshi_2063 | 0.32 | +0.1 | |
2,185,697 | - | Dshi_2063 | 0.85 | -1.0 | |
2,185,730 | + | Dshi_2063 | 0.90 | +2.8 | |
2,185,792 | - | +0.7 |
Or see this region's nucleotide sequence