Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2031 and Dshi_2032 are separated by 117 nucleotides Dshi_2032 and Dshi_2033 are separated by 12 nucleotides
Dshi_2031: Dshi_2031 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,150,586 to 2,151,734
_2031
Dshi_2032: Dshi_2032 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 2,151,852 to 2,152,367
_2032
Dshi_2033: Dshi_2033 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,152,380 to 2,153,708
_2033
Position (kb)
2151
2152
2153 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2150.910 kb on + strand, within Dshi_2031 at 2150.925 kb on + strand, within Dshi_2031 at 2150.925 kb on + strand, within Dshi_2031 at 2150.989 kb on + strand, within Dshi_2031 at 2151.069 kb on + strand, within Dshi_2031 at 2151.151 kb on + strand, within Dshi_2031 at 2151.253 kb on + strand, within Dshi_2031 at 2151.313 kb on - strand, within Dshi_2031 at 2151.432 kb on - strand, within Dshi_2031 at 2151.442 kb on - strand, within Dshi_2031 at 2151.446 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.582 kb on - strand, within Dshi_2031 at 2151.649 kb on - strand at 2151.666 kb on + strand at 2151.787 kb on - strand at 2151.807 kb on - strand at 2151.807 kb on - strand at 2151.807 kb on - strand at 2151.810 kb on + strand at 2151.838 kb on - strand at 2151.998 kb on - strand, within Dshi_2032 at 2152.010 kb on + strand, within Dshi_2032 at 2152.136 kb on - strand, within Dshi_2032 at 2152.182 kb on + strand, within Dshi_2032 at 2152.208 kb on + strand, within Dshi_2032 at 2152.272 kb on + strand, within Dshi_2032 at 2152.366 kb on - strand at 2152.382 kb on + strand at 2152.532 kb on + strand, within Dshi_2033 at 2152.533 kb on + strand, within Dshi_2033 at 2152.533 kb on + strand, within Dshi_2033 at 2152.541 kb on - strand, within Dshi_2033 at 2152.710 kb on + strand, within Dshi_2033 at 2152.767 kb on + strand, within Dshi_2033 at 2152.861 kb on + strand, within Dshi_2033 at 2152.923 kb on + strand, within Dshi_2033 at 2152.931 kb on - strand, within Dshi_2033 at 2153.054 kb on + strand, within Dshi_2033 at 2153.071 kb on + strand, within Dshi_2033 at 2153.072 kb on - strand, within Dshi_2033 at 2153.208 kb on - strand, within Dshi_2033 at 2153.208 kb on - strand, within Dshi_2033 at 2153.246 kb on + strand, within Dshi_2033 at 2153.254 kb on - strand, within Dshi_2033
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 2,150,910 + Dshi_2031 0.28 -1.0 2,150,925 + Dshi_2031 0.30 +2.5 2,150,925 + Dshi_2031 0.30 -1.4 2,150,989 + Dshi_2031 0.35 +1.0 2,151,069 + Dshi_2031 0.42 -0.0 2,151,151 + Dshi_2031 0.49 +2.4 2,151,253 + Dshi_2031 0.58 -2.2 2,151,313 - Dshi_2031 0.63 -0.1 2,151,432 - Dshi_2031 0.74 -1.0 2,151,442 - Dshi_2031 0.74 -0.0 2,151,446 + Dshi_2031 0.75 -2.5 2,151,538 + Dshi_2031 0.83 -1.6 2,151,538 + Dshi_2031 0.83 -2.2 2,151,538 + Dshi_2031 0.83 -1.3 2,151,538 + Dshi_2031 0.83 +3.0 2,151,582 - Dshi_2031 0.87 -0.0 2,151,649 - +1.1 2,151,666 + +0.0 2,151,787 - +0.5 2,151,807 - +0.7 2,151,807 - +0.4 2,151,807 - -1.5 2,151,810 + -1.8 2,151,838 - -1.4 2,151,998 - Dshi_2032 0.28 +3.3 2,152,010 + Dshi_2032 0.31 -1.0 2,152,136 - Dshi_2032 0.55 -0.1 2,152,182 + Dshi_2032 0.64 -0.0 2,152,208 + Dshi_2032 0.69 -0.5 2,152,272 + Dshi_2032 0.81 -0.6 2,152,366 - -0.4 2,152,382 + -1.3 2,152,532 + Dshi_2033 0.11 -0.1 2,152,533 + Dshi_2033 0.12 -1.3 2,152,533 + Dshi_2033 0.12 -1.0 2,152,541 - Dshi_2033 0.12 +2.5 2,152,710 + Dshi_2033 0.25 +0.5 2,152,767 + Dshi_2033 0.29 +1.0 2,152,861 + Dshi_2033 0.36 -1.6 2,152,923 + Dshi_2033 0.41 -0.6 2,152,931 - Dshi_2033 0.41 +0.0 2,153,054 + Dshi_2033 0.51 +0.1 2,153,071 + Dshi_2033 0.52 -1.2 2,153,072 - Dshi_2033 0.52 +1.7 2,153,208 - Dshi_2033 0.62 -1.6 2,153,208 - Dshi_2033 0.62 -1.2 2,153,246 + Dshi_2033 0.65 -2.4 2,153,254 - Dshi_2033 0.66 -2.0
Or see this region's nucleotide sequence