Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_R0040

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1989 and Dshi_R0040 are separated by 127 nucleotidesDshi_R0040 and Dshi_1990 are separated by 95 nucleotides Dshi_1989: Dshi_1989 - secretion protein HlyD family protein (RefSeq), at 2,103,220 to 2,104,452 _1989 Dshi_R0040: Dshi_R0040 - tRNA-Arg (RefSeq), at 2,104,580 to 2,104,656 _R0040 Dshi_1990: Dshi_1990 - aminoglycoside phosphotransferase (RefSeq), at 2,104,752 to 2,106,995 _1990 Position (kb) 2104 2105Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2103.822 kb on - strand, within Dshi_1989at 2103.887 kb on - strand, within Dshi_1989at 2104.063 kb on + strand, within Dshi_1989at 2104.164 kb on - strand, within Dshi_1989at 2104.164 kb on - strand, within Dshi_1989at 2104.230 kb on - strand, within Dshi_1989at 2104.258 kb on - strand, within Dshi_1989at 2104.322 kb on - strand, within Dshi_1989at 2104.824 kb on + strandat 2104.849 kb on + strandat 2104.879 kb on - strandat 2105.007 kb on + strand, within Dshi_1990at 2105.048 kb on + strand, within Dshi_1990at 2105.172 kb on - strandat 2105.172 kb on - strand, within Dshi_1990at 2105.294 kb on - strand, within Dshi_1990at 2105.407 kb on + strand, within Dshi_1990at 2105.500 kb on - strand, within Dshi_1990

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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2,103,822 - Dshi_1989 0.49 -1.9
2,103,887 - Dshi_1989 0.54 -2.3
2,104,063 + Dshi_1989 0.68 -0.5
2,104,164 - Dshi_1989 0.77 -1.0
2,104,164 - Dshi_1989 0.77 +0.2
2,104,230 - Dshi_1989 0.82 -2.0
2,104,258 - Dshi_1989 0.84 +1.0
2,104,322 - Dshi_1989 0.89 +3.3
2,104,824 + -2.7
2,104,849 + -2.7
2,104,879 - -1.5
2,105,007 + Dshi_1990 0.11 -0.0
2,105,048 + Dshi_1990 0.13 -1.0
2,105,172 - +1.0
2,105,172 - Dshi_1990 0.19 -1.6
2,105,294 - Dshi_1990 0.24 -0.5
2,105,407 + Dshi_1990 0.29 -1.4
2,105,500 - Dshi_1990 0.33 -2.6

Or see this region's nucleotide sequence