Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1873
Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Chloramphenicol 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,951,896 | + | Dshi_1872 | 0.41 | -0.9 | |
1,951,907 | + | Dshi_1872 | 0.42 | +1.0 | |
1,951,930 | - | Dshi_1872 | 0.44 | +1.7 | |
1,952,386 | + | Dshi_1872 | 0.80 | -1.3 | |
1,952,434 | + | Dshi_1872 | 0.83 | -0.6 | |
1,952,583 | - | -2.5 | |||
1,952,615 | + | -1.0 | |||
1,952,625 | + | -2.0 | |||
1,952,733 | - | -0.0 | |||
1,952,736 | + | +3.0 | |||
1,952,793 | + | -3.0 | |||
1,952,985 | + | Dshi_1873 | 0.61 | +0.9 | |
1,953,006 | + | Dshi_1873 | 0.68 | +2.4 | |
1,953,034 | - | Dshi_1873 | 0.77 | -0.9 | |
1,953,057 | - | Dshi_1873 | 0.84 | -0.7 | |
1,953,075 | + | +1.0 | |||
1,953,083 | - | +0.3 | |||
1,953,083 | - | +0.8 | |||
1,953,196 | - | +3.8 | |||
1,953,332 | - | Dshi_1874 | 0.27 | +1.5 | |
1,953,540 | - | Dshi_1874 | 0.61 | +0.9 | |
1,953,623 | - | Dshi_1874 | 0.75 | +0.4 | |
1,953,629 | - | Dshi_1874 | 0.76 | -1.4 | |
1,953,868 | - | +0.6 | |||
1,953,920 | + | -2.1 | |||
1,953,928 | - | -2.6 | |||
1,953,950 | - | +0.0 |
Or see this region's nucleotide sequence