Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1873

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1872 and Dshi_1873 are separated by 153 nucleotidesDshi_1873 and Dshi_1874 are separated by 67 nucleotidesDshi_1874 and Dshi_1875 are separated by 138 nucleotides Dshi_1872: Dshi_1872 - hypothetical protein (RefSeq), at 1,951,375 to 1,952,643 _1872 Dshi_1873: Dshi_1873 - cytochrome c class I (RefSeq), at 1,952,797 to 1,953,105 _1873 Dshi_1874: Dshi_1874 - transcriptional regulator, TetR family (RefSeq), at 1,953,173 to 1,953,769 _1874 Dshi_1875: Dshi_1875 - protein of unknown function DUF417 (RefSeq), at 1,953,908 to 1,954,423 _1875 Position (kb) 1952 1953 1954Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1951.896 kb on + strand, within Dshi_1872at 1951.907 kb on + strand, within Dshi_1872at 1951.930 kb on - strand, within Dshi_1872at 1952.386 kb on + strand, within Dshi_1872at 1952.434 kb on + strand, within Dshi_1872at 1952.583 kb on - strandat 1952.615 kb on + strandat 1952.625 kb on + strandat 1952.733 kb on - strandat 1952.736 kb on + strandat 1952.793 kb on + strandat 1952.985 kb on + strand, within Dshi_1873at 1953.006 kb on + strand, within Dshi_1873at 1953.034 kb on - strand, within Dshi_1873at 1953.057 kb on - strand, within Dshi_1873at 1953.075 kb on + strandat 1953.083 kb on - strandat 1953.083 kb on - strandat 1953.196 kb on - strandat 1953.332 kb on - strand, within Dshi_1874at 1953.540 kb on - strand, within Dshi_1874at 1953.623 kb on - strand, within Dshi_1874at 1953.629 kb on - strand, within Dshi_1874at 1953.868 kb on - strandat 1953.920 kb on + strandat 1953.928 kb on - strandat 1953.950 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
remove
1,951,896 + Dshi_1872 0.41 -0.9
1,951,907 + Dshi_1872 0.42 +1.0
1,951,930 - Dshi_1872 0.44 +1.7
1,952,386 + Dshi_1872 0.80 -1.3
1,952,434 + Dshi_1872 0.83 -0.6
1,952,583 - -2.5
1,952,615 + -1.0
1,952,625 + -2.0
1,952,733 - -0.0
1,952,736 + +3.0
1,952,793 + -3.0
1,952,985 + Dshi_1873 0.61 +0.9
1,953,006 + Dshi_1873 0.68 +2.4
1,953,034 - Dshi_1873 0.77 -0.9
1,953,057 - Dshi_1873 0.84 -0.7
1,953,075 + +1.0
1,953,083 - +0.3
1,953,083 - +0.8
1,953,196 - +3.8
1,953,332 - Dshi_1874 0.27 +1.5
1,953,540 - Dshi_1874 0.61 +0.9
1,953,623 - Dshi_1874 0.75 +0.4
1,953,629 - Dshi_1874 0.76 -1.4
1,953,868 - +0.6
1,953,920 + -2.1
1,953,928 - -2.6
1,953,950 - +0.0

Or see this region's nucleotide sequence