Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1728 and Dshi_1729 are separated by 62 nucleotides Dshi_1729 and Dshi_1730 are separated by 43 nucleotides Dshi_1730 and Dshi_1731 are separated by 62 nucleotides
Dshi_1728: Dshi_1728 - arginyl-tRNA synthetase (RefSeq), at 1,794,601 to 1,796,346
_1728
Dshi_1729: Dshi_1729 - putative deoxyguanosinetriphosphate triphosphohydrolase (RefSeq), at 1,796,409 to 1,797,608
_1729
Dshi_1730: Dshi_1730 - iron-sulfur cluster assembly accessory protein (RefSeq), at 1,797,652 to 1,797,984
_1730
Dshi_1731: Dshi_1731 - hypothetical protein (RefSeq), at 1,798,047 to 1,798,658
_1731
Position (kb)
1796
1797
1798 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1796.422 kb on + strand at 1796.440 kb on + strand at 1796.457 kb on + strand at 1796.467 kb on + strand at 1796.631 kb on + strand, within Dshi_1729 at 1796.770 kb on + strand, within Dshi_1729 at 1796.948 kb on - strand, within Dshi_1729 at 1797.077 kb on - strand, within Dshi_1729 at 1797.130 kb on - strand, within Dshi_1729 at 1797.151 kb on - strand, within Dshi_1729 at 1797.260 kb on - strand, within Dshi_1729 at 1797.307 kb on + strand, within Dshi_1729 at 1797.317 kb on + strand, within Dshi_1729 at 1797.358 kb on + strand, within Dshi_1729 at 1797.358 kb on + strand, within Dshi_1729 at 1797.368 kb on + strand, within Dshi_1729 at 1797.437 kb on - strand, within Dshi_1729 at 1798.281 kb on - strand, within Dshi_1731
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,796,422 + -0.4 1,796,440 + -1.8 1,796,457 + +1.2 1,796,467 + -2.0 1,796,631 + Dshi_1729 0.18 +0.2 1,796,770 + Dshi_1729 0.30 -1.5 1,796,948 - Dshi_1729 0.45 -1.2 1,797,077 - Dshi_1729 0.56 +0.5 1,797,130 - Dshi_1729 0.60 -1.6 1,797,151 - Dshi_1729 0.62 -0.5 1,797,260 - Dshi_1729 0.71 -2.2 1,797,307 + Dshi_1729 0.75 +0.8 1,797,317 + Dshi_1729 0.76 -1.0 1,797,358 + Dshi_1729 0.79 +0.8 1,797,358 + Dshi_1729 0.79 -3.9 1,797,368 + Dshi_1729 0.80 -1.7 1,797,437 - Dshi_1729 0.86 -2.9 1,798,281 - Dshi_1731 0.38 +0.6
Or see this region's nucleotide sequence