Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1667 and Dshi_1668 overlap by 4 nucleotides Dshi_1668 and Dshi_1669 are separated by 5 nucleotides
Dshi_1667: Dshi_1667 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 1,733,528 to 1,735,960
_1667
Dshi_1668: Dshi_1668 - nitrite reductase (NAD(P)H), small subunit (RefSeq), at 1,735,957 to 1,736,298
_1668
Dshi_1669: Dshi_1669 - Nitrate reductase (EC 1.7.99.4) (from data) , at 1,736,304 to 1,738,925
_1669
Position (kb)
1735
1736
1737 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1735.148 kb on + strand, within Dshi_1667 at 1735.209 kb on + strand, within Dshi_1667 at 1735.222 kb on + strand, within Dshi_1667 at 1735.474 kb on + strand, within Dshi_1667 at 1735.484 kb on - strand, within Dshi_1667 at 1735.484 kb on - strand, within Dshi_1667 at 1735.516 kb on + strand, within Dshi_1667 at 1735.516 kb on + strand, within Dshi_1667 at 1735.524 kb on - strand, within Dshi_1667 at 1735.526 kb on - strand, within Dshi_1667 at 1735.526 kb on - strand, within Dshi_1667 at 1735.555 kb on - strand, within Dshi_1667 at 1735.760 kb on - strand at 1735.835 kb on - strand at 1735.936 kb on + strand at 1736.028 kb on - strand, within Dshi_1668 at 1736.112 kb on - strand, within Dshi_1668 at 1736.148 kb on - strand, within Dshi_1668 at 1736.235 kb on + strand, within Dshi_1668 at 1736.254 kb on + strand, within Dshi_1668 at 1736.295 kb on - strand at 1736.310 kb on + strand at 1736.428 kb on - strand at 1736.433 kb on - strand at 1736.448 kb on - strand at 1736.457 kb on + strand at 1736.568 kb on - strand, within Dshi_1669 at 1736.845 kb on - strand, within Dshi_1669 at 1736.864 kb on - strand, within Dshi_1669 at 1736.896 kb on + strand, within Dshi_1669 at 1736.896 kb on + strand, within Dshi_1669 at 1737.008 kb on + strand, within Dshi_1669 at 1737.049 kb on - strand, within Dshi_1669 at 1737.066 kb on + strand, within Dshi_1669 at 1737.066 kb on + strand, within Dshi_1669 at 1737.074 kb on - strand, within Dshi_1669 at 1737.096 kb on + strand, within Dshi_1669 at 1737.274 kb on - strand, within Dshi_1669
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,735,148 + Dshi_1667 0.67 -0.2 1,735,209 + Dshi_1667 0.69 +0.6 1,735,222 + Dshi_1667 0.70 +0.6 1,735,474 + Dshi_1667 0.80 +0.0 1,735,484 - Dshi_1667 0.80 +0.6 1,735,484 - Dshi_1667 0.80 -0.0 1,735,516 + Dshi_1667 0.82 -2.8 1,735,516 + Dshi_1667 0.82 +2.8 1,735,524 - Dshi_1667 0.82 +0.2 1,735,526 - Dshi_1667 0.82 +1.4 1,735,526 - Dshi_1667 0.82 +2.5 1,735,555 - Dshi_1667 0.83 +0.9 1,735,760 - +1.2 1,735,835 - -0.2 1,735,936 + +1.9 1,736,028 - Dshi_1668 0.21 -1.2 1,736,112 - Dshi_1668 0.45 +0.6 1,736,148 - Dshi_1668 0.56 -1.1 1,736,235 + Dshi_1668 0.81 -3.4 1,736,254 + Dshi_1668 0.87 +1.0 1,736,295 - -0.7 1,736,310 + -0.7 1,736,428 - +0.6 1,736,433 - +0.6 1,736,448 - +0.8 1,736,457 + +0.4 1,736,568 - Dshi_1669 0.10 -0.4 1,736,845 - Dshi_1669 0.21 +2.0 1,736,864 - Dshi_1669 0.21 +0.5 1,736,896 + Dshi_1669 0.23 -0.4 1,736,896 + Dshi_1669 0.23 +0.5 1,737,008 + Dshi_1669 0.27 +0.0 1,737,049 - Dshi_1669 0.28 -0.5 1,737,066 + Dshi_1669 0.29 +0.3 1,737,066 + Dshi_1669 0.29 +0.2 1,737,074 - Dshi_1669 0.29 +2.2 1,737,096 + Dshi_1669 0.30 +1.0 1,737,274 - Dshi_1669 0.37 -0.9
Or see this region's nucleotide sequence