Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1651
Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Chloramphenicol 0.0002 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,715,171 | + | Dshi_1650 | 0.19 | +0.9 | |
1,715,215 | + | Dshi_1650 | 0.23 | +1.1 | |
1,715,223 | - | Dshi_1650 | 0.23 | +2.2 | |
1,715,314 | - | Dshi_1650 | 0.31 | +1.0 | |
1,715,570 | - | Dshi_1650 | 0.53 | +3.1 | |
1,715,649 | - | Dshi_1650 | 0.60 | +0.9 | |
1,715,734 | + | Dshi_1650 | 0.67 | +1.2 | |
1,715,752 | - | Dshi_1650 | 0.69 | -0.0 | |
1,715,988 | - | Dshi_1650 | 0.89 | +1.4 | |
1,716,005 | + | +0.5 | |||
1,716,069 | - | -1.1 | |||
1,716,071 | + | +0.6 | |||
1,716,071 | + | +1.1 | |||
1,716,079 | - | +1.7 | |||
1,716,128 | - | +1.4 | |||
1,716,197 | + | +1.7 | |||
1,716,205 | - | +0.6 | |||
1,716,215 | - | +0.4 | |||
1,716,324 | + | Dshi_1651 | 0.19 | +0.8 | |
1,716,326 | + | Dshi_1651 | 0.20 | +0.8 | |
1,716,379 | + | Dshi_1651 | 0.25 | +2.2 | |
1,716,682 | + | Dshi_1651 | 0.55 | +0.4 | |
1,716,749 | + | Dshi_1651 | 0.62 | +1.4 | |
1,716,944 | - | Dshi_1651 | 0.81 | +1.4 | |
1,717,053 | - | +0.4 | |||
1,717,081 | - | +1.9 | |||
1,717,123 | + | +1.5 | |||
1,717,294 | - | +3.3 | |||
1,717,328 | + | +0.9 | |||
1,717,370 | - | Dshi_1652 | 0.12 | +0.8 | |
1,717,560 | + | Dshi_1652 | 0.26 | +0.3 | |
1,717,813 | + | Dshi_1652 | 0.45 | -0.2 | |
1,717,945 | + | Dshi_1652 | 0.54 | +1.2 | |
1,718,036 | - | Dshi_1652 | 0.61 | +2.1 |
Or see this region's nucleotide sequence