Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1600 and Dshi_1601 are separated by 146 nucleotides Dshi_1601 and Dshi_1602 are separated by 4 nucleotides Dshi_1602 and Dshi_1603 are separated by 225 nucleotides Dshi_1603 and Dshi_1604 are separated by 56 nucleotides
Dshi_1600: Dshi_1600 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,665,720 to 1,666,031
_1600
Dshi_1601: Dshi_1601 - ribosomal protein S9 (RefSeq), at 1,666,178 to 1,666,672
_1601
Dshi_1602: Dshi_1602 - ribosomal protein L13 (RefSeq), at 1,666,677 to 1,667,135
_1602
Dshi_1603: Dshi_1603 - thioesterase superfamily protein (RefSeq), at 1,667,361 to 1,667,783
_1603
Dshi_1604: Dshi_1604 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,667,840 to 1,668,634
_1604
Position (kb)
1666
1667
1668 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1665.798 kb on + strand, within Dshi_1600 at 1665.932 kb on + strand, within Dshi_1600 at 1666.021 kb on - strand at 1667.393 kb on - strand at 1667.408 kb on - strand, within Dshi_1603 at 1667.410 kb on + strand, within Dshi_1603 at 1667.455 kb on - strand, within Dshi_1603 at 1667.455 kb on - strand, within Dshi_1603 at 1667.455 kb on - strand, within Dshi_1603 at 1667.455 kb on - strand, within Dshi_1603 at 1667.560 kb on + strand, within Dshi_1603 at 1667.568 kb on - strand, within Dshi_1603 at 1667.687 kb on - strand, within Dshi_1603 at 1667.733 kb on + strand, within Dshi_1603 at 1667.806 kb on + strand at 1667.851 kb on - strand at 1667.893 kb on - strand at 1667.894 kb on - strand at 1667.908 kb on - strand at 1667.918 kb on - strand at 1667.958 kb on + strand, within Dshi_1604 at 1668.046 kb on + strand, within Dshi_1604 at 1668.046 kb on + strand, within Dshi_1604 at 1668.053 kb on + strand, within Dshi_1604 at 1668.106 kb on - strand, within Dshi_1604
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,665,798 + Dshi_1600 0.25 -0.3 1,665,932 + Dshi_1600 0.68 +0.1 1,666,021 - +0.4 1,667,393 - -1.4 1,667,408 - Dshi_1603 0.11 -0.1 1,667,410 + Dshi_1603 0.12 +0.1 1,667,455 - Dshi_1603 0.22 -0.2 1,667,455 - Dshi_1603 0.22 -0.3 1,667,455 - Dshi_1603 0.22 +0.2 1,667,455 - Dshi_1603 0.22 -2.0 1,667,560 + Dshi_1603 0.47 -1.7 1,667,568 - Dshi_1603 0.49 -0.5 1,667,687 - Dshi_1603 0.77 -0.3 1,667,733 + Dshi_1603 0.88 +0.4 1,667,806 + -3.0 1,667,851 - +1.6 1,667,893 - -0.8 1,667,894 - +1.0 1,667,908 - -0.2 1,667,918 - +1.2 1,667,958 + Dshi_1604 0.15 +0.7 1,668,046 + Dshi_1604 0.26 +0.9 1,668,046 + Dshi_1604 0.26 +1.1 1,668,053 + Dshi_1604 0.27 -1.9 1,668,106 - Dshi_1604 0.33 +1.5
Or see this region's nucleotide sequence