Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1453

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1451 and Dshi_1452 overlap by 4 nucleotidesDshi_1452 and Dshi_1453 are separated by 21 nucleotidesDshi_1453 and Dshi_1454 are separated by 94 nucleotidesDshi_1454 and Dshi_1455 are separated by 209 nucleotidesDshi_1455 and Dshi_1456 overlap by 1 nucleotides Dshi_1451: Dshi_1451 - ABC transporter related (RefSeq), at 1,510,331 to 1,511,080 _1451 Dshi_1452: Dshi_1452 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,511,077 to 1,511,940 _1452 Dshi_1453: Dshi_1453 - putative sulfonate/nitrate transport system substrate-binding protein (RefSeq), at 1,511,962 to 1,512,945 _1453 Dshi_1454: Dshi_1454 - hypothetical protein (RefSeq), at 1,513,040 to 1,513,537 _1454 Dshi_1455: Dshi_1455 - transposase (RefSeq), at 1,513,747 to 1,513,896 _1455 Dshi_1456: Dshi_1456 - Integrase catalytic region (RefSeq), at 1,513,896 to 1,514,609 _1456 Position (kb) 1511 1512 1513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1511.149 kb on + strandat 1511.170 kb on - strand, within Dshi_1452at 1511.317 kb on - strand, within Dshi_1452at 1511.513 kb on + strand, within Dshi_1452at 1511.605 kb on + strand, within Dshi_1452at 1511.806 kb on - strand, within Dshi_1452at 1511.831 kb on - strand, within Dshi_1452at 1511.891 kb on + strandat 1511.937 kb on + strandat 1511.955 kb on - strandat 1512.149 kb on + strand, within Dshi_1453at 1512.250 kb on - strand, within Dshi_1453at 1512.393 kb on + strand, within Dshi_1453at 1512.456 kb on - strand, within Dshi_1453at 1512.607 kb on - strand, within Dshi_1453at 1512.679 kb on - strand, within Dshi_1453at 1512.722 kb on - strand, within Dshi_1453at 1512.882 kb on + strandat 1512.957 kb on + strandat 1513.015 kb on - strandat 1513.112 kb on + strand, within Dshi_1454at 1513.120 kb on - strand, within Dshi_1454at 1513.304 kb on + strand, within Dshi_1454at 1513.496 kb on - strandat 1513.572 kb on - strandat 1513.593 kb on + strandat 1513.729 kb on + strandat 1513.787 kb on + strand, within Dshi_1455at 1513.795 kb on - strand, within Dshi_1455at 1513.898 kb on - strandat 1513.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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1,511,149 + +2.5
1,511,170 - Dshi_1452 0.11 +3.1
1,511,317 - Dshi_1452 0.28 -0.1
1,511,513 + Dshi_1452 0.50 +1.7
1,511,605 + Dshi_1452 0.61 -0.4
1,511,806 - Dshi_1452 0.84 -0.1
1,511,831 - Dshi_1452 0.87 -1.6
1,511,891 + +0.9
1,511,937 + +2.9
1,511,955 - -0.7
1,512,149 + Dshi_1453 0.19 +2.7
1,512,250 - Dshi_1453 0.29 +2.1
1,512,393 + Dshi_1453 0.44 -1.4
1,512,456 - Dshi_1453 0.50 +2.5
1,512,607 - Dshi_1453 0.66 -1.7
1,512,679 - Dshi_1453 0.73 -0.5
1,512,722 - Dshi_1453 0.77 +1.9
1,512,882 + +0.9
1,512,957 + +0.5
1,513,015 - -2.3
1,513,112 + Dshi_1454 0.14 +0.0
1,513,120 - Dshi_1454 0.16 +0.7
1,513,304 + Dshi_1454 0.53 -1.2
1,513,496 - +0.3
1,513,572 - +0.6
1,513,593 + -1.4
1,513,729 + +0.9
1,513,787 + Dshi_1455 0.27 -0.0
1,513,795 - Dshi_1455 0.32 -3.3
1,513,898 - -0.9
1,513,933 - -0.7

Or see this region's nucleotide sequence