Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1449 and Dshi_1450 are separated by 56 nucleotides Dshi_1450 and Dshi_1451 overlap by 4 nucleotides Dshi_1451 and Dshi_1452 overlap by 4 nucleotides
Dshi_1449: Dshi_1449 - TonB-dependent receptor (RefSeq), at 1,506,778 to 1,509,000
_1449
Dshi_1450: Dshi_1450 - NnrS family protein (RefSeq), at 1,509,057 to 1,510,334
_1450
Dshi_1451: Dshi_1451 - ABC transporter related (RefSeq), at 1,510,331 to 1,511,080
_1451
Dshi_1452: Dshi_1452 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,511,077 to 1,511,940
_1452
Position (kb)
1509
1510
1511 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1508.248 kb on - strand, within Dshi_1449 at 1508.295 kb on + strand, within Dshi_1449 at 1508.300 kb on + strand, within Dshi_1449 at 1508.365 kb on + strand, within Dshi_1449 at 1508.365 kb on + strand, within Dshi_1449 at 1508.475 kb on - strand, within Dshi_1449 at 1508.534 kb on - strand, within Dshi_1449 at 1508.677 kb on + strand, within Dshi_1449 at 1508.703 kb on + strand, within Dshi_1449 at 1508.742 kb on - strand, within Dshi_1449 at 1508.810 kb on + strand at 1508.922 kb on + strand at 1509.264 kb on - strand, within Dshi_1450 at 1509.359 kb on - strand, within Dshi_1450 at 1509.412 kb on - strand, within Dshi_1450 at 1509.461 kb on - strand, within Dshi_1450 at 1509.539 kb on - strand, within Dshi_1450 at 1509.554 kb on + strand, within Dshi_1450 at 1509.741 kb on + strand, within Dshi_1450 at 1509.779 kb on + strand, within Dshi_1450 at 1510.047 kb on + strand, within Dshi_1450 at 1510.096 kb on + strand, within Dshi_1450 at 1510.288 kb on + strand at 1510.474 kb on + strand, within Dshi_1451 at 1510.518 kb on + strand, within Dshi_1451 at 1510.593 kb on - strand, within Dshi_1451 at 1510.594 kb on - strand, within Dshi_1451 at 1510.598 kb on + strand, within Dshi_1451 at 1510.623 kb on + strand, within Dshi_1451 at 1510.631 kb on - strand, within Dshi_1451 at 1510.887 kb on + strand, within Dshi_1451 at 1511.149 kb on + strand at 1511.170 kb on - strand, within Dshi_1452 at 1511.317 kb on - strand, within Dshi_1452
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,508,248 - Dshi_1449 0.66 +2.5 1,508,295 + Dshi_1449 0.68 -1.4 1,508,300 + Dshi_1449 0.68 -2.4 1,508,365 + Dshi_1449 0.71 +2.2 1,508,365 + Dshi_1449 0.71 +0.7 1,508,475 - Dshi_1449 0.76 +1.6 1,508,534 - Dshi_1449 0.79 +2.5 1,508,677 + Dshi_1449 0.85 -2.7 1,508,703 + Dshi_1449 0.87 +2.4 1,508,742 - Dshi_1449 0.88 -1.7 1,508,810 + +3.2 1,508,922 + +0.9 1,509,264 - Dshi_1450 0.16 +0.9 1,509,359 - Dshi_1450 0.24 +3.2 1,509,412 - Dshi_1450 0.28 -1.4 1,509,461 - Dshi_1450 0.32 +0.9 1,509,539 - Dshi_1450 0.38 +1.2 1,509,554 + Dshi_1450 0.39 +1.7 1,509,741 + Dshi_1450 0.54 +2.3 1,509,779 + Dshi_1450 0.56 +1.0 1,510,047 + Dshi_1450 0.77 -2.9 1,510,096 + Dshi_1450 0.81 +0.9 1,510,288 + +1.9 1,510,474 + Dshi_1451 0.19 +2.5 1,510,518 + Dshi_1451 0.25 -1.0 1,510,593 - Dshi_1451 0.35 +0.3 1,510,594 - Dshi_1451 0.35 +1.9 1,510,598 + Dshi_1451 0.36 -2.1 1,510,623 + Dshi_1451 0.39 -1.1 1,510,631 - Dshi_1451 0.40 -0.7 1,510,887 + Dshi_1451 0.74 -2.1 1,511,149 + +2.5 1,511,170 - Dshi_1452 0.11 +3.1 1,511,317 - Dshi_1452 0.28 -0.1
Or see this region's nucleotide sequence