Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1376

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1375 and Dshi_1376 are separated by 56 nucleotidesDshi_1376 and Dshi_1377 overlap by 8 nucleotidesDshi_1377 and Dshi_1378 overlap by 1 nucleotides Dshi_1375: Dshi_1375 - Ornithine decarboxylase (RefSeq), at 1,428,663 to 1,429,859 _1375 Dshi_1376: Dshi_1376 - Creatininase (RefSeq), at 1,429,916 to 1,430,713 _1376 Dshi_1377: Dshi_1377 - 2OG-Fe(II) oxygenase (RefSeq), at 1,430,706 to 1,431,608 _1377 Dshi_1378: Dshi_1378 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 1,431,608 to 1,432,243 _1378 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1429.153 kb on - strand, within Dshi_1375at 1429.231 kb on + strand, within Dshi_1375at 1429.648 kb on + strand, within Dshi_1375at 1429.954 kb on - strandat 1430.128 kb on + strand, within Dshi_1376at 1430.169 kb on + strand, within Dshi_1376at 1430.172 kb on - strand, within Dshi_1376at 1430.879 kb on + strand, within Dshi_1377at 1430.886 kb on + strand, within Dshi_1377at 1430.966 kb on + strand, within Dshi_1377at 1431.002 kb on - strand, within Dshi_1377at 1431.157 kb on - strand, within Dshi_1377at 1431.170 kb on + strand, within Dshi_1377at 1431.385 kb on + strand, within Dshi_1377at 1431.385 kb on + strand, within Dshi_1377at 1431.393 kb on - strand, within Dshi_1377at 1431.538 kb on + strandat 1431.551 kb on - strandat 1431.625 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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1,429,153 - Dshi_1375 0.41 -0.5
1,429,231 + Dshi_1375 0.47 -2.4
1,429,648 + Dshi_1375 0.82 +0.9
1,429,954 - +1.0
1,430,128 + Dshi_1376 0.27 +1.3
1,430,169 + Dshi_1376 0.32 +0.8
1,430,172 - Dshi_1376 0.32 -2.8
1,430,879 + Dshi_1377 0.19 +3.0
1,430,886 + Dshi_1377 0.20 -0.5
1,430,966 + Dshi_1377 0.29 -1.5
1,431,002 - Dshi_1377 0.33 +1.0
1,431,157 - Dshi_1377 0.50 -0.5
1,431,170 + Dshi_1377 0.51 +0.2
1,431,385 + Dshi_1377 0.75 +1.0
1,431,385 + Dshi_1377 0.75 +2.0
1,431,393 - Dshi_1377 0.76 -1.5
1,431,538 + +0.2
1,431,551 - -1.0
1,431,625 + -1.4

Or see this region's nucleotide sequence