Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1370 and Dshi_1371 are separated by 9 nucleotides Dshi_1371 and Dshi_1372 are separated by 12 nucleotides Dshi_1372 and Dshi_1373 overlap by 4 nucleotides
Dshi_1370: Dshi_1370 - dihydropyrimidinase (RefSeq), at 1,422,758 to 1,424,209
_1370
Dshi_1371: Dshi_1371 - ABC transporter related (RefSeq), at 1,424,219 to 1,425,220
_1371
Dshi_1372: Dshi_1372 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,425,233 to 1,426,150
_1372
Dshi_1373: Dshi_1373 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,426,147 to 1,427,058
_1373
Position (kb)
1424
1425
1426 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1423.374 kb on + strand, within Dshi_1370 at 1423.386 kb on + strand, within Dshi_1370 at 1423.440 kb on - strand, within Dshi_1370 at 1423.519 kb on + strand, within Dshi_1370 at 1423.527 kb on - strand, within Dshi_1370 at 1423.634 kb on + strand, within Dshi_1370 at 1423.641 kb on - strand, within Dshi_1370 at 1423.642 kb on - strand, within Dshi_1370 at 1423.655 kb on + strand, within Dshi_1370 at 1424.046 kb on - strand, within Dshi_1370 at 1424.153 kb on + strand at 1424.297 kb on - strand at 1424.469 kb on + strand, within Dshi_1371 at 1424.648 kb on - strand, within Dshi_1371 at 1424.737 kb on + strand, within Dshi_1371 at 1424.770 kb on + strand, within Dshi_1371 at 1424.857 kb on + strand, within Dshi_1371 at 1424.976 kb on - strand, within Dshi_1371 at 1425.123 kb on + strand at 1425.244 kb on - strand at 1425.318 kb on - strand at 1425.325 kb on + strand, within Dshi_1372 at 1425.631 kb on - strand, within Dshi_1372 at 1425.827 kb on - strand, within Dshi_1372 at 1425.841 kb on - strand, within Dshi_1372 at 1425.852 kb on + strand, within Dshi_1372 at 1425.860 kb on - strand, within Dshi_1372 at 1426.040 kb on + strand, within Dshi_1372
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,423,374 + Dshi_1370 0.42 -0.6 1,423,386 + Dshi_1370 0.43 -0.5 1,423,440 - Dshi_1370 0.47 -2.0 1,423,519 + Dshi_1370 0.52 -1.0 1,423,527 - Dshi_1370 0.53 +2.7 1,423,634 + Dshi_1370 0.60 +0.5 1,423,641 - Dshi_1370 0.61 -4.0 1,423,642 - Dshi_1370 0.61 -0.3 1,423,655 + Dshi_1370 0.62 +1.0 1,424,046 - Dshi_1370 0.89 -2.2 1,424,153 + +2.3 1,424,297 - -1.2 1,424,469 + Dshi_1371 0.25 +0.8 1,424,648 - Dshi_1371 0.43 +1.0 1,424,737 + Dshi_1371 0.52 +3.0 1,424,770 + Dshi_1371 0.55 +0.3 1,424,857 + Dshi_1371 0.64 -0.5 1,424,976 - Dshi_1371 0.76 -2.3 1,425,123 + -0.5 1,425,244 - +1.0 1,425,318 - -1.1 1,425,325 + Dshi_1372 0.10 -2.1 1,425,631 - Dshi_1372 0.43 -0.4 1,425,827 - Dshi_1372 0.65 -0.5 1,425,841 - Dshi_1372 0.66 -1.3 1,425,852 + Dshi_1372 0.67 +4.0 1,425,860 - Dshi_1372 0.68 -0.4 1,426,040 + Dshi_1372 0.88 -2.1
Or see this region's nucleotide sequence