Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1366 and Dshi_1367 are separated by 34 nucleotides Dshi_1367 and Dshi_1368 are separated by 30 nucleotides Dshi_1368 and Dshi_1369 are separated by 16 nucleotides
Dshi_1366: Dshi_1366 - aminotransferase class-III (RefSeq), at 1,418,987 to 1,420,312
_1366
Dshi_1367: Dshi_1367 - amidase, hydantoinase/carbamoylase family (RefSeq), at 1,420,347 to 1,421,621
_1367
Dshi_1368: Dshi_1368 - hypothetical protein (RefSeq), at 1,421,652 to 1,421,951
_1368
Dshi_1369: Dshi_1369 - class II aldolase/adducin family protein (RefSeq), at 1,421,968 to 1,422,711
_1369
Position (kb)
1420
1421
1422 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1419.393 kb on - strand, within Dshi_1366 at 1419.393 kb on - strand, within Dshi_1366 at 1419.393 kb on - strand, within Dshi_1366 at 1419.702 kb on + strand, within Dshi_1366 at 1419.710 kb on - strand, within Dshi_1366 at 1419.780 kb on - strand, within Dshi_1366 at 1420.033 kb on + strand, within Dshi_1366 at 1420.109 kb on - strand, within Dshi_1366 at 1420.254 kb on - strand at 1420.366 kb on - strand at 1420.574 kb on - strand, within Dshi_1367 at 1420.963 kb on + strand, within Dshi_1367 at 1420.971 kb on - strand, within Dshi_1367 at 1420.971 kb on - strand, within Dshi_1367 at 1420.991 kb on - strand, within Dshi_1367 at 1421.065 kb on + strand, within Dshi_1367 at 1421.153 kb on + strand, within Dshi_1367 at 1421.269 kb on + strand, within Dshi_1367 at 1421.309 kb on - strand, within Dshi_1367 at 1421.376 kb on - strand, within Dshi_1367 at 1421.406 kb on + strand, within Dshi_1367 at 1421.485 kb on - strand, within Dshi_1367 at 1421.485 kb on - strand, within Dshi_1367 at 1421.525 kb on - strand at 1421.574 kb on + strand at 1421.590 kb on - strand at 1421.590 kb on - strand at 1421.590 kb on - strand at 1421.767 kb on - strand, within Dshi_1368 at 1421.819 kb on + strand, within Dshi_1368 at 1421.979 kb on + strand at 1422.372 kb on + strand, within Dshi_1369 at 1422.491 kb on + strand, within Dshi_1369
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,419,393 - Dshi_1366 0.31 -3.4 1,419,393 - Dshi_1366 0.31 -1.2 1,419,393 - Dshi_1366 0.31 -3.4 1,419,702 + Dshi_1366 0.54 +2.2 1,419,710 - Dshi_1366 0.55 +1.0 1,419,780 - Dshi_1366 0.60 -0.5 1,420,033 + Dshi_1366 0.79 +0.7 1,420,109 - Dshi_1366 0.85 -1.3 1,420,254 - -2.7 1,420,366 - +0.3 1,420,574 - Dshi_1367 0.18 +1.0 1,420,963 + Dshi_1367 0.48 -1.3 1,420,971 - Dshi_1367 0.49 -1.4 1,420,971 - Dshi_1367 0.49 -1.8 1,420,991 - Dshi_1367 0.51 -0.8 1,421,065 + Dshi_1367 0.56 +0.4 1,421,153 + Dshi_1367 0.63 -0.1 1,421,269 + Dshi_1367 0.72 +0.5 1,421,309 - Dshi_1367 0.75 -0.5 1,421,376 - Dshi_1367 0.81 -1.7 1,421,406 + Dshi_1367 0.83 +2.0 1,421,485 - Dshi_1367 0.89 -0.4 1,421,485 - Dshi_1367 0.89 +0.5 1,421,525 - -0.3 1,421,574 + -3.1 1,421,590 - +0.3 1,421,590 - +1.8 1,421,590 - -1.3 1,421,767 - Dshi_1368 0.38 -2.6 1,421,819 + Dshi_1368 0.56 -0.9 1,421,979 + -0.5 1,422,372 + Dshi_1369 0.54 -1.3 1,422,491 + Dshi_1369 0.70 +2.8
Or see this region's nucleotide sequence