Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1276 and Dshi_1277 overlap by 14 nucleotides Dshi_1277 and Dshi_1278 overlap by 4 nucleotides Dshi_1278 and Dshi_1279 are separated by 11 nucleotides Dshi_1279 and Dshi_1280 are separated by 16 nucleotides
Dshi_1276: Dshi_1276 - ABC transporter related (RefSeq), at 1,326,293 to 1,327,087
_1276
Dshi_1277: Dshi_1277 - hypothetical protein (RefSeq), at 1,327,074 to 1,327,316
_1277
Dshi_1278: Dshi_1278 - Phytanoyl-CoA dioxygenase (RefSeq), at 1,327,313 to 1,328,482
_1278
Dshi_1279: Dshi_1279 - Myo-inositol catabolism IolB domain protein (RefSeq), at 1,328,494 to 1,329,306
_1279
Dshi_1280: Dshi_1280 - aminotransferase class V (RefSeq), at 1,329,323 to 1,330,588
_1280
Position (kb)
1327
1328
1329 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1326.459 kb on + strand, within Dshi_1276 at 1326.692 kb on - strand, within Dshi_1276 at 1326.731 kb on - strand, within Dshi_1276 at 1326.786 kb on - strand, within Dshi_1276 at 1326.951 kb on + strand, within Dshi_1276 at 1326.966 kb on + strand, within Dshi_1276 at 1326.987 kb on + strand, within Dshi_1276 at 1327.114 kb on - strand, within Dshi_1277 at 1327.178 kb on - strand, within Dshi_1277 at 1327.195 kb on + strand, within Dshi_1277 at 1327.195 kb on + strand, within Dshi_1277 at 1327.203 kb on - strand, within Dshi_1277 at 1327.238 kb on - strand, within Dshi_1277 at 1327.322 kb on + strand at 1327.362 kb on - strand at 1327.537 kb on + strand, within Dshi_1278 at 1327.539 kb on + strand, within Dshi_1278 at 1327.547 kb on - strand, within Dshi_1278 at 1327.565 kb on + strand, within Dshi_1278 at 1327.644 kb on - strand, within Dshi_1278 at 1327.768 kb on + strand, within Dshi_1278 at 1327.827 kb on + strand, within Dshi_1278 at 1327.930 kb on - strand, within Dshi_1278 at 1327.961 kb on + strand, within Dshi_1278 at 1328.057 kb on - strand, within Dshi_1278 at 1328.059 kb on - strand, within Dshi_1278 at 1328.425 kb on + strand at 1328.515 kb on + strand at 1328.573 kb on + strand at 1328.630 kb on - strand, within Dshi_1279 at 1328.664 kb on - strand, within Dshi_1279 at 1328.715 kb on - strand, within Dshi_1279 at 1328.855 kb on + strand, within Dshi_1279 at 1328.965 kb on + strand, within Dshi_1279 at 1329.000 kb on - strand, within Dshi_1279 at 1329.021 kb on - strand, within Dshi_1279 at 1329.107 kb on - strand, within Dshi_1279 at 1329.157 kb on - strand, within Dshi_1279 at 1329.180 kb on + strand, within Dshi_1279 at 1329.330 kb on - strand at 1329.440 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,326,459 + Dshi_1276 0.21 -0.2 1,326,692 - Dshi_1276 0.50 -2.7 1,326,731 - Dshi_1276 0.55 +0.5 1,326,786 - Dshi_1276 0.62 +1.8 1,326,951 + Dshi_1276 0.83 +1.0 1,326,966 + Dshi_1276 0.85 -3.4 1,326,987 + Dshi_1276 0.87 -0.3 1,327,114 - Dshi_1277 0.16 -0.8 1,327,178 - Dshi_1277 0.43 -1.3 1,327,195 + Dshi_1277 0.50 +1.0 1,327,195 + Dshi_1277 0.50 -1.5 1,327,203 - Dshi_1277 0.53 -0.0 1,327,238 - Dshi_1277 0.67 -0.8 1,327,322 + +3.6 1,327,362 - +0.3 1,327,537 + Dshi_1278 0.19 +0.0 1,327,539 + Dshi_1278 0.19 +1.0 1,327,547 - Dshi_1278 0.20 +3.0 1,327,565 + Dshi_1278 0.22 +1.0 1,327,644 - Dshi_1278 0.28 -2.1 1,327,768 + Dshi_1278 0.39 -2.7 1,327,827 + Dshi_1278 0.44 +0.0 1,327,930 - Dshi_1278 0.53 -1.4 1,327,961 + Dshi_1278 0.55 +0.0 1,328,057 - Dshi_1278 0.64 +0.5 1,328,059 - Dshi_1278 0.64 +1.0 1,328,425 + -3.1 1,328,515 + -2.3 1,328,573 + +1.0 1,328,630 - Dshi_1279 0.17 +2.6 1,328,664 - Dshi_1279 0.21 +3.0 1,328,715 - Dshi_1279 0.27 +0.5 1,328,855 + Dshi_1279 0.44 -1.0 1,328,965 + Dshi_1279 0.58 -1.5 1,329,000 - Dshi_1279 0.62 +1.6 1,329,021 - Dshi_1279 0.65 -1.7 1,329,107 - Dshi_1279 0.75 -0.1 1,329,157 - Dshi_1279 0.82 +1.0 1,329,180 + Dshi_1279 0.84 -1.8 1,329,330 - +0.2 1,329,440 + -2.7
Or see this region's nucleotide sequence