Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1263 and Dshi_1264 are separated by 76 nucleotides Dshi_1264 and Dshi_1265 are separated by 19 nucleotides Dshi_1265 and Dshi_1266 overlap by 4 nucleotides Dshi_1266 and Dshi_1267 overlap by 4 nucleotides
Dshi_1263: Dshi_1263 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,312,365 to 1,313,612
_1263
Dshi_1264: Dshi_1264 - Ion transport 2 domain protein (RefSeq), at 1,313,689 to 1,314,135
_1264
Dshi_1265: Dshi_1265 - Inositol 2-dehydrogenase (RefSeq), at 1,314,155 to 1,315,138
_1265
Dshi_1266: Dshi_1266 - ketose-bisphosphate aldolase (RefSeq), at 1,315,135 to 1,315,977
_1266
Dshi_1267: Dshi_1267 - hypothetical protein (RefSeq), at 1,315,974 to 1,316,834
_1267
Position (kb)
1314
1315
1316 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1313.205 kb on - strand, within Dshi_1263 at 1313.438 kb on + strand, within Dshi_1263 at 1313.614 kb on - strand at 1313.624 kb on + strand at 1313.624 kb on + strand at 1313.651 kb on - strand at 1313.672 kb on + strand at 1313.691 kb on + strand at 1313.712 kb on + strand at 1313.801 kb on + strand, within Dshi_1264 at 1313.816 kb on - strand, within Dshi_1264 at 1313.886 kb on + strand, within Dshi_1264 at 1313.886 kb on + strand, within Dshi_1264 at 1313.974 kb on + strand, within Dshi_1264 at 1314.129 kb on + strand at 1314.143 kb on + strand at 1314.148 kb on + strand at 1314.189 kb on + strand at 1314.217 kb on - strand at 1314.225 kb on - strand at 1314.285 kb on + strand, within Dshi_1265 at 1314.303 kb on + strand, within Dshi_1265 at 1314.483 kb on - strand, within Dshi_1265 at 1314.514 kb on - strand, within Dshi_1265 at 1314.769 kb on + strand, within Dshi_1265 at 1314.838 kb on - strand, within Dshi_1265 at 1314.935 kb on - strand, within Dshi_1265 at 1315.014 kb on + strand, within Dshi_1265 at 1315.119 kb on - strand at 1315.242 kb on + strand, within Dshi_1266 at 1315.250 kb on - strand, within Dshi_1266 at 1315.274 kb on + strand, within Dshi_1266 at 1315.293 kb on + strand, within Dshi_1266 at 1315.421 kb on + strand, within Dshi_1266 at 1315.491 kb on - strand, within Dshi_1266 at 1315.625 kb on - strand, within Dshi_1266 at 1315.703 kb on + strand, within Dshi_1266 at 1315.915 kb on + strand at 1315.920 kb on + strand at 1315.928 kb on - strand at 1316.027 kb on - strand at 1316.074 kb on - strand, within Dshi_1267 at 1316.131 kb on - strand, within Dshi_1267
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,313,205 - Dshi_1263 0.67 +0.1 1,313,438 + Dshi_1263 0.86 -1.0 1,313,614 - +1.9 1,313,624 + +1.4 1,313,624 + -2.4 1,313,651 - +0.5 1,313,672 + -1.8 1,313,691 + +0.6 1,313,712 + +0.4 1,313,801 + Dshi_1264 0.25 +2.7 1,313,816 - Dshi_1264 0.28 -0.5 1,313,886 + Dshi_1264 0.44 +1.8 1,313,886 + Dshi_1264 0.44 -1.8 1,313,974 + Dshi_1264 0.64 +1.1 1,314,129 + +0.1 1,314,143 + +0.4 1,314,148 + +2.1 1,314,189 + -0.7 1,314,217 - -0.5 1,314,225 - -0.7 1,314,285 + Dshi_1265 0.13 -1.3 1,314,303 + Dshi_1265 0.15 +0.7 1,314,483 - Dshi_1265 0.33 +0.1 1,314,514 - Dshi_1265 0.36 +0.1 1,314,769 + Dshi_1265 0.62 -2.8 1,314,838 - Dshi_1265 0.69 -1.6 1,314,935 - Dshi_1265 0.79 -1.9 1,315,014 + Dshi_1265 0.87 -0.5 1,315,119 - -2.5 1,315,242 + Dshi_1266 0.13 +0.3 1,315,250 - Dshi_1266 0.14 -0.2 1,315,274 + Dshi_1266 0.16 +0.2 1,315,293 + Dshi_1266 0.19 -1.9 1,315,421 + Dshi_1266 0.34 -0.5 1,315,491 - Dshi_1266 0.42 -3.3 1,315,625 - Dshi_1266 0.58 -2.5 1,315,703 + Dshi_1266 0.67 +1.1 1,315,915 + -1.7 1,315,920 + +0.4 1,315,928 - +1.1 1,316,027 - +1.8 1,316,074 - Dshi_1267 0.12 -0.5 1,316,131 - Dshi_1267 0.18 -0.5
Or see this region's nucleotide sequence