Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1167

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1166 and Dshi_1167 overlap by 4 nucleotidesDshi_1167 and Dshi_1168 are separated by 52 nucleotides Dshi_1166: Dshi_1166 - small GTP-binding protein (RefSeq), at 1,195,258 to 1,196,730 _1166 Dshi_1167: Dshi_1167 - peptidase M48 Ste24p (RefSeq), at 1,196,727 to 1,198,073 _1167 Dshi_1168: Dshi_1168 - aminotransferase class I and II (RefSeq), at 1,198,126 to 1,199,301 _1168 Position (kb) 1196 1197 1198 1199Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1196.745 kb on - strandat 1196.778 kb on + strandat 1196.929 kb on - strand, within Dshi_1167at 1197.373 kb on - strand, within Dshi_1167at 1197.407 kb on - strand, within Dshi_1167at 1197.690 kb on - strand, within Dshi_1167at 1197.811 kb on + strand, within Dshi_1167at 1197.843 kb on + strand, within Dshi_1167at 1198.059 kb on - strandat 1198.090 kb on - strandat 1198.102 kb on + strandat 1198.110 kb on - strandat 1198.318 kb on + strand, within Dshi_1168at 1198.318 kb on + strand, within Dshi_1168at 1198.326 kb on - strand, within Dshi_1168at 1198.370 kb on + strand, within Dshi_1168at 1198.378 kb on - strand, within Dshi_1168at 1198.535 kb on + strand, within Dshi_1168at 1198.535 kb on + strand, within Dshi_1168at 1198.706 kb on - strand, within Dshi_1168at 1198.735 kb on - strand, within Dshi_1168at 1199.007 kb on + strand, within Dshi_1168

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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1,196,745 - +0.1
1,196,778 + +1.5
1,196,929 - Dshi_1167 0.15 -0.2
1,197,373 - Dshi_1167 0.48 +1.1
1,197,407 - Dshi_1167 0.50 -2.5
1,197,690 - Dshi_1167 0.71 +1.1
1,197,811 + Dshi_1167 0.80 -1.8
1,197,843 + Dshi_1167 0.83 +1.3
1,198,059 - +2.1
1,198,090 - -2.4
1,198,102 + -0.3
1,198,110 - +1.1
1,198,318 + Dshi_1168 0.16 -2.1
1,198,318 + Dshi_1168 0.16 +3.4
1,198,326 - Dshi_1168 0.17 -3.0
1,198,370 + Dshi_1168 0.21 -1.2
1,198,378 - Dshi_1168 0.21 -0.3
1,198,535 + Dshi_1168 0.35 -0.5
1,198,535 + Dshi_1168 0.35 -1.9
1,198,706 - Dshi_1168 0.49 -2.1
1,198,735 - Dshi_1168 0.52 +3.1
1,199,007 + Dshi_1168 0.75 -0.4

Or see this region's nucleotide sequence