Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1109

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1107 and Dshi_1108 are separated by 95 nucleotidesDshi_1108 and Dshi_1109 are separated by 87 nucleotidesDshi_1109 and Dshi_1110 are separated by 7 nucleotides Dshi_1107: Dshi_1107 - Pol-Pal system-associated acyl-CoA thioesterase (RefSeq), at 1,132,927 to 1,133,337 _1107 Dshi_1108: Dshi_1108 - Tol-Pal system TolQ (RefSeq), at 1,133,433 to 1,134,107 _1108 Dshi_1109: Dshi_1109 - Biopolymer transport TolR (RefSeq), at 1,134,195 to 1,134,599 _1109 Dshi_1110: Dshi_1110 - hypothetical protein (RefSeq), at 1,134,607 to 1,135,662 _1110 Position (kb) 1134 1135Strain fitness (log2 ratio) -2 -1 0 1at 1133.219 kb on + strand, within Dshi_1107at 1133.278 kb on - strand, within Dshi_1107at 1133.316 kb on - strandat 1133.422 kb on - strandat 1133.432 kb on - strandat 1134.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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1,133,219 + Dshi_1107 0.71 +1.0
1,133,278 - Dshi_1107 0.85 -2.2
1,133,316 - -2.4
1,133,422 - -1.8
1,133,432 - -0.6
1,134,602 - -2.0

Or see this region's nucleotide sequence