Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1056

Experiment: m.b. Chloramphenicol 0.0002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1055 and Dshi_1056 are separated by 11 nucleotidesDshi_1056 and Dshi_1057 overlap by 4 nucleotides Dshi_1055: Dshi_1055 - ABC transporter related (RefSeq), at 1,088,608 to 1,089,708 _1055 Dshi_1056: Dshi_1056 - polysaccharide deacetylase (RefSeq), at 1,089,720 to 1,090,628 _1056 Dshi_1057: Dshi_1057 - L-carnitine dehydratase/bile acid-inducible protein F (RefSeq), at 1,090,625 to 1,091,812 _1057 Position (kb) 1089 1090 1091Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1088.722 kb on - strand, within Dshi_1055at 1088.800 kb on + strand, within Dshi_1055at 1088.854 kb on + strand, within Dshi_1055at 1088.891 kb on + strand, within Dshi_1055at 1088.995 kb on - strand, within Dshi_1055at 1089.014 kb on - strand, within Dshi_1055at 1089.024 kb on + strand, within Dshi_1055at 1089.134 kb on - strand, within Dshi_1055at 1089.175 kb on - strand, within Dshi_1055at 1089.228 kb on + strand, within Dshi_1055at 1089.350 kb on - strand, within Dshi_1055at 1089.368 kb on - strand, within Dshi_1055at 1089.438 kb on + strand, within Dshi_1055at 1089.472 kb on - strand, within Dshi_1055at 1089.496 kb on - strand, within Dshi_1055at 1089.554 kb on + strand, within Dshi_1055at 1089.562 kb on - strand, within Dshi_1055at 1089.582 kb on - strand, within Dshi_1055at 1089.636 kb on - strandat 1089.657 kb on - strandat 1089.870 kb on + strand, within Dshi_1056at 1089.892 kb on + strand, within Dshi_1056at 1090.061 kb on - strand, within Dshi_1056at 1090.123 kb on - strand, within Dshi_1056at 1090.183 kb on + strand, within Dshi_1056at 1090.183 kb on + strand, within Dshi_1056at 1090.275 kb on + strand, within Dshi_1056at 1090.313 kb on + strand, within Dshi_1056at 1090.321 kb on - strand, within Dshi_1056at 1090.336 kb on - strand, within Dshi_1056at 1090.361 kb on - strand, within Dshi_1056at 1090.407 kb on - strand, within Dshi_1056at 1090.409 kb on - strand, within Dshi_1056at 1090.437 kb on - strand, within Dshi_1056at 1090.474 kb on + strand, within Dshi_1056at 1090.553 kb on - strandat 1090.828 kb on + strand, within Dshi_1057at 1090.859 kb on + strand, within Dshi_1057at 1091.024 kb on - strand, within Dshi_1057at 1091.044 kb on - strand, within Dshi_1057at 1091.107 kb on - strand, within Dshi_1057at 1091.200 kb on + strand, within Dshi_1057at 1091.203 kb on - strand, within Dshi_1057at 1091.208 kb on - strand, within Dshi_1057at 1091.251 kb on + strand, within Dshi_1057at 1091.369 kb on - strandat 1091.437 kb on + strand, within Dshi_1057

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml
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1,088,722 - Dshi_1055 0.10 +0.9
1,088,800 + Dshi_1055 0.17 -1.3
1,088,854 + Dshi_1055 0.22 -0.6
1,088,891 + Dshi_1055 0.26 -1.1
1,088,995 - Dshi_1055 0.35 +0.2
1,089,014 - Dshi_1055 0.37 -0.4
1,089,024 + Dshi_1055 0.38 -0.4
1,089,134 - Dshi_1055 0.48 +3.4
1,089,175 - Dshi_1055 0.51 +0.9
1,089,228 + Dshi_1055 0.56 -3.9
1,089,350 - Dshi_1055 0.67 -1.1
1,089,368 - Dshi_1055 0.69 +2.0
1,089,438 + Dshi_1055 0.75 -4.0
1,089,472 - Dshi_1055 0.78 -1.1
1,089,496 - Dshi_1055 0.81 -1.1
1,089,554 + Dshi_1055 0.86 -2.0
1,089,562 - Dshi_1055 0.87 -1.6
1,089,582 - Dshi_1055 0.88 -3.1
1,089,636 - -0.5
1,089,657 - -0.6
1,089,870 + Dshi_1056 0.17 +1.2
1,089,892 + Dshi_1056 0.19 +2.9
1,090,061 - Dshi_1056 0.38 -2.3
1,090,123 - Dshi_1056 0.44 +1.1
1,090,183 + Dshi_1056 0.51 +0.9
1,090,183 + Dshi_1056 0.51 -1.9
1,090,275 + Dshi_1056 0.61 +0.3
1,090,313 + Dshi_1056 0.65 -0.7
1,090,321 - Dshi_1056 0.66 +0.9
1,090,336 - Dshi_1056 0.68 +0.3
1,090,361 - Dshi_1056 0.71 -0.5
1,090,407 - Dshi_1056 0.76 +1.5
1,090,409 - Dshi_1056 0.76 -0.1
1,090,437 - Dshi_1056 0.79 -3.0
1,090,474 + Dshi_1056 0.83 -0.2
1,090,553 - -1.5
1,090,828 + Dshi_1057 0.17 -3.0
1,090,859 + Dshi_1057 0.20 -0.1
1,091,024 - Dshi_1057 0.34 +1.2
1,091,044 - Dshi_1057 0.35 -3.4
1,091,107 - Dshi_1057 0.41 -1.5
1,091,200 + Dshi_1057 0.48 -0.6
1,091,203 - Dshi_1057 0.49 +0.0
1,091,208 - Dshi_1057 0.49 +0.2
1,091,251 + Dshi_1057 0.53 -0.5
1,091,369 - +0.9
1,091,437 + Dshi_1057 0.68 +0.6

Or see this region's nucleotide sequence