Experiment: m.b. Chloramphenicol 0.0002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1043 and Dshi_1044 are separated by 503 nucleotides Dshi_1044 and Dshi_1045 overlap by 4 nucleotides Dshi_1045 and Dshi_1046 overlap by 4 nucleotides
Dshi_1043: Dshi_1043 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,076,851 to 1,077,846
_1043
Dshi_1044: Dshi_1044 - transcriptional regulator, GntR family (RefSeq), at 1,078,350 to 1,079,054
_1044
Dshi_1045: Dshi_1045 - HpcH/HpaI aldolase (RefSeq), at 1,079,051 to 1,079,896
_1045
Dshi_1046: Dshi_1046 - Amidase (RefSeq), at 1,079,893 to 1,081,023
_1046
Position (kb)
1078
1079
1080 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1077.404 kb on - strand, within Dshi_1043 at 1077.627 kb on + strand, within Dshi_1043 at 1077.700 kb on - strand, within Dshi_1043 at 1077.784 kb on - strand at 1077.856 kb on + strand at 1077.857 kb on - strand at 1077.907 kb on - strand at 1077.965 kb on + strand at 1077.965 kb on + strand at 1078.232 kb on + strand at 1078.270 kb on + strand at 1078.334 kb on + strand at 1078.342 kb on - strand at 1078.556 kb on - strand, within Dshi_1044 at 1078.612 kb on - strand, within Dshi_1044 at 1078.630 kb on - strand, within Dshi_1044 at 1078.679 kb on - strand, within Dshi_1044 at 1078.735 kb on + strand, within Dshi_1044 at 1078.803 kb on - strand, within Dshi_1044 at 1078.933 kb on + strand, within Dshi_1044 at 1078.978 kb on + strand, within Dshi_1044 at 1079.034 kb on + strand at 1079.246 kb on + strand, within Dshi_1045 at 1079.782 kb on + strand, within Dshi_1045 at 1079.795 kb on + strand, within Dshi_1045 at 1079.802 kb on + strand, within Dshi_1045 at 1079.949 kb on + strand at 1079.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0002 mg/ml remove 1,077,404 - Dshi_1043 0.56 -2.1 1,077,627 + Dshi_1043 0.78 +0.9 1,077,700 - Dshi_1043 0.85 +1.4 1,077,784 - +0.9 1,077,856 + -3.8 1,077,857 - +3.3 1,077,907 - +0.9 1,077,965 + -0.1 1,077,965 + -2.1 1,078,232 + +1.5 1,078,270 + +1.8 1,078,334 + +0.9 1,078,342 - -1.6 1,078,556 - Dshi_1044 0.29 +0.9 1,078,612 - Dshi_1044 0.37 -1.4 1,078,630 - Dshi_1044 0.40 -2.6 1,078,679 - Dshi_1044 0.47 +1.9 1,078,735 + Dshi_1044 0.55 -1.6 1,078,803 - Dshi_1044 0.64 -2.1 1,078,933 + Dshi_1044 0.83 -0.6 1,078,978 + Dshi_1044 0.89 +0.5 1,079,034 + +0.9 1,079,246 + Dshi_1045 0.23 -1.5 1,079,782 + Dshi_1045 0.86 +3.3 1,079,795 + Dshi_1045 0.88 -1.6 1,079,802 + Dshi_1045 0.89 -2.4 1,079,949 + -0.9 1,079,956 + -1.9
Or see this region's nucleotide sequence